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bcftools-1.15.1-5.fc39 RPM for x86_64

From Fedora 39 for x86_64 / b

Name: bcftools Distribution: Fedora Project
Version: 1.15.1 Vendor: Fedora Project
Release: 5.fc39 Build date: Wed Jul 19 16:33:45 2023
Group: Unspecified Build host: buildvm-x86-07.iad2.fedoraproject.org
Size: 2647510 Source RPM: bcftools-1.15.1-5.fc39.src.rpm
Packager: Fedora Project
Url: https://www.htslib.org/
Summary: Tools for genomic variant calling and manipulating VCF/BCF files
BCFtools is a set of utilities that manipulate genomic variant calls in the
Variant Call Format (VCF) and its binary counterpart (BCF). All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

(This BCFtools includes the polysomy subcommand, which is implemented using
the GNU Scientific Library. Hence this package is licensed according to the
GNU General Public License, rather than the MIT license used when BCFtools
is built without the polysomy subcommand.)

Provides

Requires

License

GPLv3+

Changelog

* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.15.1-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Tue Jul 11 2023 Jitka Plesnikova <jplesnik@redhat.com> - 1.15.1-4
  - Perl 5.38 rebuild
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.15.1-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Tue Aug 23 2022 Mamoru TASAKA <mtasaka@fedoraproject.org> - 1.15.1-2
  - Rebuild for gsl-2.7.1
* Mon Aug 15 2022 Jun Aruga <jaruga@redhat.com> - 1.15.1-1
  - Update to BCFtools version 1.15.1
* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.13-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Mon May 30 2022 Jitka Plesnikova <jplesnik@redhat.com> - 1.13-3
  - Perl 5.36 rebuild
* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.13-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Fri Jul 23 2021 John Marshall <jmarshall@hey.com> - 1.13-1
  - Update to BCFtools version 1.13
  - Remove outdated patches which have been applied upstream
  - Update Python shebang rewriting to handle both "python" and "python3"
  - Package gff2gff.py script, added in BCFtools 1.11
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-8
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

Files

/usr/bin/bcftools
/usr/bin/color-chrs.pl
/usr/bin/gff2gff.py
/usr/bin/guess-ploidy.py
/usr/bin/plot-roh.py
/usr/bin/plot-vcfstats
/usr/bin/run-roh.pl
/usr/bin/vcfutils.pl
/usr/lib/.build-id
/usr/lib/.build-id/00
/usr/lib/.build-id/00/aa71ff4bb541c68b294236475e418c5a83b5a5
/usr/lib/.build-id/03
/usr/lib/.build-id/03/819bc747815534a73b94efc304516089962019
/usr/lib/.build-id/04
/usr/lib/.build-id/04/d56083e913453c06c49f4022bd7c989212a1db
/usr/lib/.build-id/0a
/usr/lib/.build-id/0a/bba63c83d36422ed2273d053e818c06cfc176e
/usr/lib/.build-id/11
/usr/lib/.build-id/11/1abc191da7cb17e93c2e8c5739e100cab1f3ec
/usr/lib/.build-id/14
/usr/lib/.build-id/14/68ff5dccc2875872235ead1a554b197b31b941
/usr/lib/.build-id/2b
/usr/lib/.build-id/2b/373a0336ab1b12bca1253edde3c011e8ee6ca8
/usr/lib/.build-id/2b/4ab116569da51ad9219cac3a8292fc817bab6c
/usr/lib/.build-id/34
/usr/lib/.build-id/34/cb1f6eebf16694af01fd002559d7804e034e12
/usr/lib/.build-id/36
/usr/lib/.build-id/36/186ee06d4ea12bed9709dbeaa700694debc640
/usr/lib/.build-id/38
/usr/lib/.build-id/38/ae2df44a653e9faddf65fb3a8653999078f764
/usr/lib/.build-id/3c
/usr/lib/.build-id/3c/f2d1d20b4b3ef9f69c1a9a983f8ba7208096c9
/usr/lib/.build-id/44
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/usr/lib/.build-id/77
/usr/lib/.build-id/77/268e509bc320f6b308af82e5ce079919da670e
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/usr/lib/.build-id/95
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/usr/lib/.build-id/b9
/usr/lib/.build-id/b9/0c1b3b7f4121f968660f486337dff639f867e9
/usr/lib/.build-id/ba
/usr/lib/.build-id/ba/2e8992bd63b4904bb14ed32e0c5c3e3cecdc0b
/usr/lib/.build-id/c0
/usr/lib/.build-id/c0/ab0f327b4d0488ada9abdbd099f1ed06a65c17
/usr/lib/.build-id/c4
/usr/lib/.build-id/c4/b9eb1336e0b6bf82bbd4a337ee6e172361334e
/usr/lib/.build-id/c9
/usr/lib/.build-id/c9/f774c922525b6a529c584c2e49c58af6091871
/usr/lib/.build-id/cc
/usr/lib/.build-id/cc/426cf30c5529f7169367225d8929164bf0d7a1
/usr/lib/.build-id/d3
/usr/lib/.build-id/d3/ee519871548b2efaddcac2c9d03b1f1ebfdeb7
/usr/lib/.build-id/d4
/usr/lib/.build-id/d4/53d9f7ee4cbfee0820ffe0a12fddc35e2d2f9d
/usr/lib/.build-id/db
/usr/lib/.build-id/db/84beeeb433fc2761699d63236128e4402a8daa
/usr/lib/.build-id/df
/usr/lib/.build-id/df/75a6cae4593607a0cc0f9e7c51dcfa10194e6d
/usr/lib/.build-id/e1
/usr/lib/.build-id/e1/db73fd7d015be6c7e7b8cadc3c9cb003182900
/usr/lib/.build-id/eb
/usr/lib/.build-id/eb/30c6f83497c94c3b3460b5478ee8e637e88c62
/usr/lib/.build-id/f8
/usr/lib/.build-id/f8/870ca8f6c5d0cbfb99c0e9f797552b5edf8ce9
/usr/lib/.build-id/f9
/usr/lib/.build-id/f9/e77b92fb8b0046994b6bd0ac86e7e57b176b5f
/usr/libexec/bcftools
/usr/libexec/bcftools/GTisec.so
/usr/libexec/bcftools/GTsubset.so
/usr/libexec/bcftools/ad-bias.so
/usr/libexec/bcftools/add-variantkey.so
/usr/libexec/bcftools/af-dist.so
/usr/libexec/bcftools/allele-length.so
/usr/libexec/bcftools/check-ploidy.so
/usr/libexec/bcftools/check-sparsity.so
/usr/libexec/bcftools/color-chrs.so
/usr/libexec/bcftools/contrast.so
/usr/libexec/bcftools/counts.so
/usr/libexec/bcftools/dosage.so
/usr/libexec/bcftools/fill-AN-AC.so
/usr/libexec/bcftools/fill-from-fasta.so
/usr/libexec/bcftools/fill-tags.so
/usr/libexec/bcftools/fixploidy.so
/usr/libexec/bcftools/fixref.so
/usr/libexec/bcftools/frameshifts.so
/usr/libexec/bcftools/guess-ploidy.so
/usr/libexec/bcftools/gvcfz.so
/usr/libexec/bcftools/impute-info.so
/usr/libexec/bcftools/indel-stats.so
/usr/libexec/bcftools/isecGT.so
/usr/libexec/bcftools/mendelian.so
/usr/libexec/bcftools/missing2ref.so
/usr/libexec/bcftools/parental-origin.so
/usr/libexec/bcftools/prune.so
/usr/libexec/bcftools/remove-overlaps.so
/usr/libexec/bcftools/scatter.so
/usr/libexec/bcftools/setGT.so
/usr/libexec/bcftools/smpl-stats.so
/usr/libexec/bcftools/split-vep.so
/usr/libexec/bcftools/split.so
/usr/libexec/bcftools/tag2tag.so
/usr/libexec/bcftools/trio-dnm2.so
/usr/libexec/bcftools/trio-stats.so
/usr/libexec/bcftools/trio-switch-rate.so
/usr/libexec/bcftools/variantkey-hex.so
/usr/share/doc/bcftools
/usr/share/doc/bcftools/AUTHORS
/usr/share/doc/bcftools/NEWS
/usr/share/licenses/bcftools
/usr/share/licenses/bcftools/LICENSE
/usr/share/man/man1/bcftools.1.gz


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Fabrice Bellet, Tue Jul 9 21:55:09 2024