class |
MappedBasedSequence |
A BasedSequence which maps characters according to CharMapper
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class |
PrefixedSubSequence |
A BasedSequence with an out of scope of original char sequence prefix
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class |
SegmentedSequence |
A BasedSequence which consists of segments of other BasedSequences
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class |
SegmentedSequenceFull |
A BasedSequence which consists of segments of other BasedSequences
NOTE: very efficient for random access but extremely wasteful with space by allocating 4 bytes per character in the sequence with corresponding construction penalty
use SegmentedSequenceTree which is binary tree based segmented sequence with minimal overhead and optimized to give penalty free random access for most applications.
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class |
SegmentedSequenceTree |
A BasedSequence which consists of segments of other BasedSequences
NOTE: very efficient for random access but extremely wasteful with space by allocating 4 bytes per character in the sequence with corresponding construction penalty
use SegmentedSequenceTree which is binary tree based segmented sequence with minimal overhead and optimized to give penalty free random access for most applications.
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