Class TrackedOffsetList

    • Constructor Detail

      • TrackedOffsetList

        private TrackedOffsetList​(@NotNull
                                  @NotNull BasedSequence baseSeq,
                                  @NotNull
                                  @NotNull java.util.List<TrackedOffset> trackedOffsets)
    • Method Detail

      • create

        @NotNull
        public static @NotNull TrackedOffsetList create​(@NotNull
                                                        @NotNull BasedSequence baseSeq,
                                                        @NotNull
                                                        @org.jetbrains.annotations.NotNull int[] offsets)
      • getUnresolvedOffsets

        @NotNull
        public @NotNull TrackedOffsetList getUnresolvedOffsets()
      • haveUnresolved

        public boolean haveUnresolved()
      • getBaseSeq

        @NotNull
        public @NotNull BasedSequence getBaseSeq()
      • getTrackedOffsets

        @NotNull
        public @NotNull java.util.List<TrackedOffset> getTrackedOffsets()
      • getBasedOffsetTracker

        @NotNull
        public @NotNull BasedOffsetTracker getBasedOffsetTracker()
      • getTrackedOffsets

        @NotNull
        public @NotNull TrackedOffsetList getTrackedOffsets​(int startOffset,
                                                            int endOffset)
      • addAll

        public boolean addAll​(@NotNull
                              @NotNull java.util.Collection<? extends TrackedOffset> c)
        Specified by:
        addAll in interface java.util.Collection<TrackedOffset>
        Specified by:
        addAll in interface java.util.List<TrackedOffset>
      • addAll

        public boolean addAll​(int index,
                              @NotNull
                              @NotNull java.util.Collection<? extends TrackedOffset> c)
        Specified by:
        addAll in interface java.util.List<TrackedOffset>
      • removeAll

        public boolean removeAll​(@NotNull
                                 @NotNull java.util.Collection<?> c)
        Specified by:
        removeAll in interface java.util.Collection<TrackedOffset>
        Specified by:
        removeAll in interface java.util.List<TrackedOffset>
      • retainAll

        public boolean retainAll​(@NotNull
                                 @NotNull java.util.Collection<?> c)
        Specified by:
        retainAll in interface java.util.Collection<TrackedOffset>
        Specified by:
        retainAll in interface java.util.List<TrackedOffset>
      • replaceAll

        public void replaceAll​(java.util.function.UnaryOperator<TrackedOffset> operator)
        Specified by:
        replaceAll in interface java.util.List<TrackedOffset>
      • sort

        public void sort​(java.util.Comparator<? super TrackedOffset> c)
        Specified by:
        sort in interface java.util.List<TrackedOffset>
      • clear

        public void clear()
        Specified by:
        clear in interface java.util.Collection<TrackedOffset>
        Specified by:
        clear in interface java.util.List<TrackedOffset>
      • remove

        public boolean remove​(java.lang.Object o)
        Specified by:
        remove in interface java.util.Collection<TrackedOffset>
        Specified by:
        remove in interface java.util.List<TrackedOffset>
      • size

        public int size()
        Specified by:
        size in interface java.util.Collection<TrackedOffset>
        Specified by:
        size in interface java.util.List<TrackedOffset>
      • isEmpty

        public boolean isEmpty()
        Specified by:
        isEmpty in interface java.util.Collection<TrackedOffset>
        Specified by:
        isEmpty in interface java.util.List<TrackedOffset>
      • contains

        public boolean contains​(java.lang.Object o)
        Specified by:
        contains in interface java.util.Collection<TrackedOffset>
        Specified by:
        contains in interface java.util.List<TrackedOffset>
      • iterator

        @NotNull
        public @NotNull java.util.Iterator<TrackedOffset> iterator()
        Specified by:
        iterator in interface java.util.Collection<TrackedOffset>
        Specified by:
        iterator in interface java.lang.Iterable<TrackedOffset>
        Specified by:
        iterator in interface java.util.List<TrackedOffset>
      • toArray

        @NotNull
        public @NotNull java.lang.Object[] toArray()
        Specified by:
        toArray in interface java.util.Collection<TrackedOffset>
        Specified by:
        toArray in interface java.util.List<TrackedOffset>
      • toArray

        @NotNull
        public <T> @NotNull T[] toArray​(@NotNull
                                        @NotNull T[] a)
        Specified by:
        toArray in interface java.util.Collection<TrackedOffset>
        Specified by:
        toArray in interface java.util.List<TrackedOffset>
      • containsAll

        public boolean containsAll​(@NotNull
                                   @NotNull java.util.Collection<?> c)
        Specified by:
        containsAll in interface java.util.Collection<TrackedOffset>
        Specified by:
        containsAll in interface java.util.List<TrackedOffset>
      • equals

        public boolean equals​(java.lang.Object o)
        Specified by:
        equals in interface java.util.Collection<TrackedOffset>
        Specified by:
        equals in interface java.util.List<TrackedOffset>
        Overrides:
        equals in class java.lang.Object
      • hashCode

        public int hashCode()
        Specified by:
        hashCode in interface java.util.Collection<TrackedOffset>
        Specified by:
        hashCode in interface java.util.List<TrackedOffset>
        Overrides:
        hashCode in class java.lang.Object
      • indexOf

        public int indexOf​(java.lang.Object o)
        Specified by:
        indexOf in interface java.util.List<TrackedOffset>
      • lastIndexOf

        public int lastIndexOf​(java.lang.Object o)
        Specified by:
        lastIndexOf in interface java.util.List<TrackedOffset>
      • listIterator

        @NotNull
        public @NotNull java.util.ListIterator<TrackedOffset> listIterator()
        Specified by:
        listIterator in interface java.util.List<TrackedOffset>
      • listIterator

        @NotNull
        public @NotNull java.util.ListIterator<TrackedOffset> listIterator​(int index)
        Specified by:
        listIterator in interface java.util.List<TrackedOffset>
      • subList

        @NotNull
        public @NotNull java.util.List<TrackedOffset> subList​(int fromIndex,
                                                              int toIndex)
        Specified by:
        subList in interface java.util.List<TrackedOffset>
      • spliterator

        public java.util.Spliterator<TrackedOffset> spliterator()
        Specified by:
        spliterator in interface java.util.Collection<TrackedOffset>
        Specified by:
        spliterator in interface java.lang.Iterable<TrackedOffset>
        Specified by:
        spliterator in interface java.util.List<TrackedOffset>