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| Name: python313-czifile | Distribution: openSUSE Tumbleweed |
| Version: 2026.6.12 | Vendor: openSUSE |
| Release: 1.2 | Build date: Sun Jun 14 12:27:42 2026 |
| Group: Unspecified | Build host: reproducible |
| Size: 560294 | Source RPM: python-czifile-2026.6.12-1.2.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://www.lfd.uci.edu/~gohlke/ | |
| Summary: Read Carl Zeiss(r) Image (CZI) files | |
Read image and metadata from Carl Zeiss(r) ZISRAW (CZI) microscopy files.
BSD-3-Clause
* Sun Jun 14 2026 Dirk Müller <dmueller@suse.com>
- update to 2026.6.12:
* Add CziDirectoryEntryDV.asimage convenience method.
* Refactor segment, directory, and content file parsing
(breaking).
* Add memmap parameter to CziFile/imread for lock-free parallel
subblock reads.
* Add writable property to BinaryFile.
* Change read_content functions to accept bytes or memoryview.
* Remove read_array function.
* Require imagecodecs >= 2026.6.6 for zstd1 codec.
* Support Python 3.15.
* Tue May 12 2026 Marius Grossu <marius.grossu@suse.com>
- update to 2026.4.30:
* Omit axes from coords when no meaningful metadata is available (breaking).
* Return coords['T'] as float seconds instead of datetime64 (breaking).
* Replace pixel_series with coord_scales in CziImage.attrs (breaking).
* Add coord_offsets, coord_scales, coord_units, and mpp properties to CziImage.
* Add datetime property to CziImage returning acquisition start as datetime64.
* Drop support for numpy 2.0 (SPEC0).
- 2026.4.11:
* Fall back to parsing numeric channel names as float coords['C']
- 2026.3.17:
* Add cache for decoded subblock arrays.
* Prefer imagecodecs' WIC over JPEGXR codec if available.
* Import imagecodecs functions on demand.
- 2026.3.15:
* Replace CziImagePlanes with CziImageChunks (breaking).
* Add CziImage.chunks method for flexible chunk-based iteration.
* Add CziFile.metadata_segment property.
* Add offset properties to CziAttachmentEntryA1 and subblock entry classes.
* Add CziSegmentId.packed property returning the 16-byte on-disk field.
* Manage update_pending flag in CziFile context manager for writable handles.
* Improve documentation.
- 2026.3.14:
* Add option to return pixel data at stored resolution.
* Allow sequence and slice of scene indices in imread and asarray/asxarray.
* Interpret dimension slice selection as absolute coordinates.
* Fix CziImagePlanes not upsampling Airyscan fast-scan tiles.
* Fix CziImagePlanes not downsampling PALM super-resolution tiles.
* Add command line options to select dimensions.
- 2026.3.12:
* Rewrite with many breaking changes.
* Support Zstd compression schemes.
* Support reading subblock masks.
* Add CziFile.scene interface.
* Add pyramid level access via CziImage.levels.
* Add option to read subset of image data.
* Add option to iterate over image planes in any dimension order.
* Add xarray-style attributes.
* Add asxarray method to return image as xarray DataArray with metadata.
* Add fillvalue and maxworkers parameters to asarray.
* Add option to specify pixel type.
* Promote pixel type when channels have mixed types.
* Remove Mosaic dimension from CziDirectoryEntryDV.dims; use mosaic_index.
* Reduce caching of CziDirectoryEntryDV properties.
* Remove resize and order parameters from asarray (breaking).
* Remove czi2tif function and command line script.
* Prefix public class names with Czi.
* Raise CziFileError for issues with CZI file structure.
* Use logging instead of warnings.
* Improve representation of instances.
* Add pytest-based unit tests.
* Add type hints.
* Convert docstrings to Google style with Sphinx directives.
* Remove imagecodecs-lite fallback; require imagecodecs.
* Remove scipy/ndimage dependency.
* Make tifffile an optional dependency.
* Drop support for Python < 3.12 and numpy < 2 (SPEC 0).
- Drop support for Python 3.11: added %global skip_python311 1 in spec file
(bsc#1263906)
- Remove czi2tif references in spec file because in version 2026.3.12
the function and comand line script was removed
- Use libalternatives instead of update-alternatives in SLES-16 and
Tumbleweed
* Fri Mar 06 2026 Dirk Müller <dmueller@suse.com>
- update to 2019.7.2.3:
* Replace deprecated imagecodecs.jxr codec.
* Replace deprecated tifffile.stripnull function.
* Mon Apr 28 2025 Dirk Müller <dmueller@suse.com>
- update to 2019.7.2.1:
* Czifile is a Python library to read Carl Zeiss Image (CZI)
files, the native file format of the ZEN software by Carl
Zeiss Microscopy GmbH. CZI files contain multidimensional
images and metadata from microscopy experiments.
* Wed Jul 17 2024 Ben Greiner <code@bnavigator.de>
- Revert numpy < 2 restriction
* Wed Jul 17 2024 Steve Kowalik <steven.kowalik@suse.com>
- Restrict numpy to < 2 for now.
- Switch to pyproject macros.
* Mon Feb 08 2021 Markéta Machová <mmachova@suse.com>
- Skip pythons < 3.8 because of scipy and imagecodecs
* Sat Aug 01 2020 andy great <andythe_great@pm.me>
- Update spec file to use python alternative.
* Tue Jun 02 2020 andy great <andythe_great@pm.me>
- Update to version 2019.7.2.
* Now required tifffile 2019.7.2. and above.
* Mon Mar 04 2019 John Vandenberg <jayvdb@gmail.com>
- Initial spec for v2019.1.26
/usr/bin/czifile /usr/bin/czifile-3.13 /usr/lib/python3.13/site-packages/czifile /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/INSTALLER /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/METADATA /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/RECORD /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/REQUESTED /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/WHEEL /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/entry_points.txt /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/licenses /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/licenses/LICENSE /usr/lib/python3.13/site-packages/czifile-2026.6.12.dist-info/top_level.txt /usr/lib/python3.13/site-packages/czifile/__init__.py /usr/lib/python3.13/site-packages/czifile/__main__.py /usr/lib/python3.13/site-packages/czifile/__pycache__ /usr/lib/python3.13/site-packages/czifile/__pycache__/__init__.cpython-313.opt-1.pyc /usr/lib/python3.13/site-packages/czifile/__pycache__/__init__.cpython-313.pyc /usr/lib/python3.13/site-packages/czifile/__pycache__/__main__.cpython-313.opt-1.pyc /usr/lib/python3.13/site-packages/czifile/__pycache__/__main__.cpython-313.pyc /usr/lib/python3.13/site-packages/czifile/__pycache__/czifile.cpython-313.opt-1.pyc /usr/lib/python3.13/site-packages/czifile/__pycache__/czifile.cpython-313.pyc /usr/lib/python3.13/site-packages/czifile/czifile.py /usr/lib/python3.13/site-packages/czifile/py.typed /usr/share/doc/packages/python313-czifile /usr/share/doc/packages/python313-czifile/README.rst /usr/share/libalternatives/czifile /usr/share/libalternatives/czifile/1313.conf /usr/share/licenses/python313-czifile /usr/share/licenses/python313-czifile/LICENSE
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