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| Name: hdf5_1_12_3-gnu-openmpi5-hpc | Distribution: openSUSE:Factory:zSystems |
| Version: 1.12.3 | Vendor: openSUSE |
| Release: 1.1 | Build date: Mon May 13 13:41:05 2024 |
| Group: Productivity/Scientific/Other | Build host: reproducible |
| Size: 1486968 | Source RPM: hdf5_1_12_3-gnu-openmpi5-hpc-1.12.3-1.1.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://www.hdfgroup.org/HDF5/ | |
| Summary: Command-line programs for the HDF5 scientific data format | |
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes. This package contains the gnu-openmpi5-hpc version utility functions for working with HDF5 files.
BSD-3-Clause
* Mon May 13 2024 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.12.3:
* Bumped the minimum required version of Autoconf to 2.71.
* Added new option to build libaec and zlib inline with CMake.
* Changed the error handling for a not found path in the find
plugin process.
* Removed "-commons" linking option to fix a compile error on
MacOS Sonoma that resulted in build failure.
* Doxygen User Guide documentation can be configured and
generated.
- Minor patch rebase for updated version:
* Disable-phdf5-tests.patch
* Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* Hot-fix-for-CVE-2020-10812.patch
* PPC64LE-Fix-long-double-handling.patch
* Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-wrappers.patch
- Drop upstreamed patches:
* Remove-duplicate-code.patch
* H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch
* H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch
* Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch
* Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch
* Compound-datatypes-may-not-have-members-of-size-0.patch
* H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch
* Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch
- New BuildRequires: hostname.
- Work around an sed hack in upstream configure file by dropping
"-Werror=return-type" from RPM %optflags.
* Wed Mar 20 2024 Atri Bhattacharya <badshah400@gmail.com>
- Work around bot rejection for unapplied Patch7.
* Thu Feb 22 2024 Dominique Leuenberger <dimstar@opensuse.org>
- Use %patch -P N instead of deprecated %patchN.
* Fri Feb 02 2024 Atri Bhattacharya <badshah400@gmail.com>
- Add openmpi5 and gnu-hpc-openmpi5 flavours.
* Mon Oct 23 2023 Nicolas Morey <nicolas.morey@suse.com>
- Drop support for obsolete openmpi[123]
- Prepare support for openmpi5
* Mon Feb 13 2023 Egbert Eich <eich@suse.com>
- Fix CVE-2021-37501 - overflow in calculation of data buffer due to bogus
input file (bsc#1207973).
https://github.com/HDFGroup/hdf5/issues/2458
https://github.com/HDFGroup/hdf5/pull/2459
Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch
Remove-duplicate-code.patch
* Tue Nov 15 2022 Atri Bhattacharya <badshah400@gmail.com>
- Add to specfile missing patch:
Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* Sat Oct 15 2022 Egbert Eich <eich@suse.com>
- Fix CVEs:
* CVE-2021-46244 (bsc#1195215)
Compound-datatypes-may-not-have-members-of-size-0.patch
* CVE-2018-13867 (bsc#1101906)
Validate-location-offset-of-the-accumulated-metadata-when-comparing.patch
* CVE-2018-16438 (bsc#1107069)
Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch
* CVE-2020-10812 (bsc#1167400)
Hot-fix-for-CVE-2020-10812.patch
* CVE-2021-45830 (bsc#1194375)
H5O_fsinfo_decode-Make-more-resilient-to-out-of-bounds-read.patch
* CVE-2019-8396 (bsc#1125882)
H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch
* CVE-2018-11205 (bsc#1093663)
Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch
* CVE-2021-46242 (bsc#1195212)
When-evicting-driver-info-block-NULL-the-corresponding-entry.patch
* CVE-2021-45833 (bsc#1194366)
Report-error-if-dimensions-of-chunked-storage-in-data-layout-2.patch
* CVE-2018-14031 (bsc#1101475)
H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch
* CVE-2018-17439 (bsc#1111598)
H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch
- Fix an error message:
Fix-error-message-not-the-name-but-the-link-information-is-parsed.patch
* Wed Sep 21 2022 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Remove timestamp/buildhost/kernel version from libhdf5.settings (boo#1209548).
* Wed Jul 27 2022 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.12.2:
See <https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2-RELEASE.txt>.
- Minor re-base of existing patches to apply cleanly:
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* hdf5-Remove-timestamps-from-binaries.patch
* hdf5-mpi.patch
* Disable-phdf5-tests.patch
- Drop upstreamed patch:
hdf5-1.10.8-pr1494-fix-release-check-version.patch.
* Wed May 04 2022 Egbert Eich <eich@suse.com>
- Security Fix:
Add configure option --disable-hltools to disable GIF tools as
recommended in the 1.10.8 release:
CVE-2018-17433 (bsc#1109565),
CVE-2018-17436 (bsc#1109568),
CVE-2020-10809 (bsc#1167404).
* Thu Apr 07 2022 Christoph Junghans <junghans@votca.org>
- add hdf5-wrappers.patch from Fedora, so strip flags from
wrappers and prefer shared linking
- add missing zlib-devel devel dep
* Thu Mar 31 2022 Ben Greiner <code@bnavigator.de>
- Add hdf5-1.10.8-pr1494-fix-release-check-version.patch
* boo#1179521, boo#1196682, gh#HDFGroup/hdf5#1494
* Avoids package crashes due to an overeager version check.
Packages depending on the shared libraries are not being
rebuilt in Factory after a patchlevel version bump of hdf5
without SONAME changes.
* Wed Feb 16 2022 Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.10.8:
* Added new option to control the build of High-Level tools
* Adds C++ Autotools configuration file for Intel
* Adds C++ Autotools configuration file for PGI
* Updates PGI C options
* CMake will now run the shell script tests in test/ by default
* Removed unused HDF5_ENABLE_HSIZET option from CMake
* CMake no longer builds the C++ library by default
* Removal of pre-VS2015 work-arounds
* Add CMake variable HDF5_LIB_INFIX
* Added a configure-time option to control certain compiler
warnings
* CMake option to build the HDF filter plugins project as an
external project
* Added a configure-time option to consider certain compiler
warnings
* Autotools and CMake target added to produce doxygen generated
documentation
* CMake option to build the HDF filter plugins project as an
external project
* Added CMake option to format source files
* Change how the release part of version, in major.minor.release
is checked
* H5Gcreate1() now rejects size_hint parameters larger than
UINT32_MAX
* H5Pset_fapl_log() no longer crashes when passed an invalid
fapl ID
* Fixes a segfault when H5Pset_mdc_log_options() is called
multiple times
* File locking now works on Windows
* H5Epush_ret() now requires a trailing semicolon
* Improved performance of H5Sget_select_elem_pointlist
* H5Fget_name_f fixed to handle correctly trailing whitespaces
and newly allocated buffers.
* Added new H5S functions.
* Refactored the perform tools and removed dependencies on test
library.
* h5repack added help text for user-defined filters.
* Doxygen documentation is available when configured and
generated.
* Fixed CVE-2018-17432 (bsc#1109564)
* Fixed a segmentation fault
* Detection of simple data transform function "x"
* Fixed CVE-2020-10810 - an invalid read and memory leak when
parsing (bsc#1167401)
* Fixed CVE-2018-14460 (bsc#1102175)
* Fixed CVE-2018-11206 (bsc#1093657)
(same issue as CVE-2018-14032 (bsc#1101474))
* Fixed CVE-2018-14033 (bsc#1101471)
(same issue as CVE-2020-10811 (bsc#1167405))
* Remove underscores on header file guards
* H5FArray.java class:
- Convert the entire byte array into a 1-d array of the
desired type, rather than performing 1 conversion per row;
- Use the Java Arrays method copyOfRange to grab the section
of the array from (1) that is desired to be inserted into
the destination array.
* Corrected path searched by CMake find_package command
* Corrected pkg-config compile script
* Fixed CMake C++ compiler flags
* Autotools clang debug optimization level change
* Better support for libaec (open-source Szip library) in CMake
* Refactor CMake configure for Fortran
* Remove arbitrary warning flag groups from CMake builds
* Reclassify CMake messages, to allow new modes and --log-level
option
* Fixes Autotools determination of the stat struct having an
st_blocks field
* Changed how h5dump and h5ls identify long double.
* Fixed tools argument parsing.
* Updated doxygen comments with changes for release
- Minor rebase of patches to apply cleanly.
* Fri Jan 29 2021 Egbert Eich <eich@suse.com>
- Fix update_so_version.sh, write so versions to file being included.
/usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5clear /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5copy /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5debug /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5diff /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5dump /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5format_convert /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5import /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5jam /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5ls /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5mkgrp /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5perf /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5perf_serial /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5redeploy /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5repack /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5repart /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5stat /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5unjam /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/h5watch /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/perf /usr/lib/hpc/gnu13/openmpi5/hdf5/1.12.3/bin/ph5diff
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