OpenMS  2.8.0
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MyriMatchAdapter

Identifies peptides in MS/MS spectra via MyriMatch.

pot. predecessor tools $ \longrightarrow $ MyriMatchAdapter $ \longrightarrow $ pot. successor tools
any signal-/preprocessing tool
(in mzML format)
IDFilter or
any protein/peptide processing tool

MyriMatch must be installed on the system to be able to use the MyriMatchAdapter. MyriMatch is currently available as part of the Bumbershoot package. See http://proteowizard.sourceforge.net/downloads.shtml. for further information on how to download and install MyriMatch on your system.

This wrapper has been tested successfully with MyriMatch, version 2.1.x. and 2.2.x.

Use debug level >=1 to keep intermediate pepXML and configuration files for manual inspection.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool: