Package BioSQL :: Module BioSeq
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Module BioSeq

source code

Implementations of Biopython-like Seq objects on top of BioSQL.

This allows retrival of items stored in a BioSQL database using a biopython-like Seq interface.

Classes [hide private]
  DBSeq
  DBSeqRecord
BioSQL equivalent of the biopython SeqRecord object.
Functions [hide private]
 
_retrieve_seq(adaptor, primary_id) source code
 
_retrieve_dbxrefs(adaptor, primary_id)
Retrieve the database cross references for the sequence.
source code
 
_retrieve_features(adaptor, primary_id) source code
 
_retrieve_location_qualifier_value(adaptor, location_id) source code
 
_retrieve_annotations(adaptor, primary_id, taxon_id) source code
 
_retrieve_qualifier_value(adaptor, primary_id) source code
 
_retrieve_reference(adaptor, primary_id) source code
 
_retrieve_taxon(adaptor, primary_id, taxon_id) source code
Variables [hide private]
  __package__ = 'BioSQL'