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Identifier Index
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P
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R
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_
]
B
back_table
(in
CodonTable
)
bf_search()
(in
Bio.Pathway.Rep.MultiGraph
)
blosum50
(in
Bio.SubsMat.MatrixInfo
)
back_transcribe()
(in
Seq
)
big_gap
(in
Bio.MetaTool.metatool_format
)
blosum55
(in
Bio.SubsMat.MatrixInfo
)
back_transcribe()
(in
Bio.Seq
)
BinaryOp
(in
Bio.EUtils.Datatypes
)
blosum60
(in
Bio.SubsMat.MatrixInfo
)
back_transcribe()
(in
Transcribe
)
binning
(in
Bio.GFF
)
blosum62
(in
Bio.SubsMat.MatrixInfo
)
back_transcribe()
(in
Bio.utils
)
Bio
blosum65
(in
Bio.SubsMat.MatrixInfo
)
back_translate()
(in
Translator
)
BioformatDBName
(in
Bio.DBXRef
)
blosum70
(in
Bio.SubsMat.MatrixInfo
)
back_translate()
(in
Bio.utils
)
BioSeq
(in
BioSQL
)
blosum75
(in
Bio.SubsMat.MatrixInfo
)
backpropagate()
(in
HiddenLayer
)
BioSeqDatabase
(in
BioSQL
)
blosum80
(in
Bio.SubsMat.MatrixInfo
)
backpropagate()
(in
InputLayer
)
BioSeqDatabase
(in
BioSQL.BioSeqDatabase
)
blosum85
(in
Bio.SubsMat.MatrixInfo
)
backpropagate()
(in
OutputLayer
)
BioSQL
blosum90
(in
Bio.SubsMat.MatrixInfo
)
BackPropagation
(in
Bio.NeuralNetwork
)
BisectFile
(in
Bio.Mindy.FlatDB
)
blosum95
(in
Bio.SubsMat.MatrixInfo
)
backward_algorithm()
(in
AbstractDPAlgorithms
)
bitwise_and
(in
Bio.Affy.CelFile
)
Blunt
(in
Bio.Restriction.Restriction
)
BadMatrix
(in
Bio.SubsMat
)
bitwise_and
(in
Bio.distance
)
blunt()
(in
Analysis
)
BadMatrixError
(in
Bio.SubsMat
)
bitwise_not
(in
Bio.Affy.CelFile
)
bogus_DR_group
(in
Martel.test.testformats.swissprot38
)
BANGLINE
(in
Bio.EUtils.sourcegen
)
bitwise_not
(in
Bio.distance
)
Bol()
(in
Martel
)
BarChartDistribution
(in
Bio.Graphics.Distribution
)
bitwise_or
(in
Bio.Affy.CelFile
)
bootstrap()
(in
Nexus
)
Base
(in
Bio.EUtils.DTDs.LinkOut
)
bitwise_or
(in
Bio.distance
)
bounding()
(in
Location
)
base_count()
(in
_FeatureConsumer
)
bitwise_xor
(in
Bio.Affy.CelFile
)
bq_data()
(in
_RecordConsumer
)
base_count()
(in
_RecordConsumer
)
bitwise_xor
(in
Bio.distance
)
bq_header()
(in
_RecordConsumer
)
BASE_FEATURE_FORMAT
(in
Record
)
blank
(in
Bio.MetaTool.metatool_format
)
BRANCH
(in
Martel.msre_constants
)
BASE_FORMAT
(in
Record
)
blank_line
(in
Bio.Emboss.primer3_format
)
branch_metabolite
(in
Bio.MetaTool.metatool_format
)
base_number()
(in
_FeatureConsumer
)
blank_line
(in
Bio.Emboss.primersearch_format
)
branch_metabolite()
(in
_RecordConsumer
)
base_str()
(in
PrositeTerm
)
blank_line
(in
Bio.MetaTool.metatool_format
)
branch_metabolite_block
(in
Bio.MetaTool.metatool_format
)
BaseDB
(in
Bio.Mindy
)
blank_space
(in
Bio.MetaTool.metatool_format
)
branchlength2support()
(in
Tree
)
BaseDBIdsRecordSet
(in
Bio.EUtils.DBIdsClient
)
Blast
(in
Bio
)
Brief
(in
Bio.EUtils.DTDs.LinkOut
)
BaseExpand()
(in
Bio.Restriction._Update.RestrictionCompiler
)
Blast
(in
Bio.Blast.Record
)
bs
(in
Bio.Sequencing.Ace
)
BaseFlatDB
(in
Bio.Mindy.FlatDB
)
blast_cutoff()
(in
_ParametersConsumer
)
bs()
(in
_RecordConsumer
)
BaseHistoryRecordSet
(in
Bio.EUtils.HistoryClient
)
blastall()
(in
Bio.Blast.NCBIStandalone
)
buffers()
(in
Commercially_available
)
BaseSeqRecordIndexer
(in
Bio.Mindy.SimpleSeqRecord
)
BlastallCommandline
(in
Bio.Blast.Applications
)
buffers()
(in
Not_available
)
BasicChromosome
(in
Bio.Graphics
)
BlastErrorParser
(in
Bio.Blast.NCBIStandalone
)
BUFSIZE
(in
Bio.Affy.CelFile
)
BasicNetwork
(in
Bio.NeuralNetwork.BackPropagation.Network
)
BlastParser
(in
Bio.Blast.NCBIStandalone
)
BUFSIZE
(in
Bio.distance
)
BaumWelchTrainer
(in
Bio.HMM.Trainer
)
BlastParser
(in
Bio.Blast.NCBIWWW
)
build_dict()
(in
DictionaryBuilder
)
BeforePosition
(in
Bio.SeqFeature
)
BlastParser
(in
Bio.Blast.NCBIXML
)
build_peptides()
(in
_PPBuilder
)
begin_contig()
(in
_RecordConsumer
)
blastpgp()
(in
Bio.Blast.NCBIStandalone
)
build_resnum_list()
(in
FSSPAlignDict
)
begin_sequence()
(in
_RecordConsumer
)
BlastTableEntry
(in
Bio.Blast.ParseBlastTable
)
buildASTNode()
(in
GenericASTBuilder
)
benner22
(in
Bio.SubsMat.MatrixInfo
)
BlastTableReader
(in
Bio.Blast.ParseBlastTable
)
buildState()
(in
GenericParser
)
benner6
(in
Bio.SubsMat.MatrixInfo
)
BlastTableRec
(in
Bio.Blast.ParseBlastTable
)
buildTree()
(in
GenericParser
)
benner74
(in
Bio.SubsMat.MatrixInfo
)
Block
(in
Bio.Nexus.Nexus
)
buildTree_r()
(in
GenericParser
)
BerkeleyDB
(in
Bio.Mindy
)
blosum100
(in
Bio.SubsMat.MatrixInfo
)
buildtype()
(in
TypeCompiler
)
BerkeleyDB
(in
Bio.Mindy.BerkeleyDB
)
blosum30
(in
Bio.SubsMat.MatrixInfo
)
builtin_tpl_dir
(in
Bio.PopGen.SimCoal
)
Between
(in
Bio.GenBank.LocationParser
)
blosum35
(in
Bio.SubsMat.MatrixInfo
)
byte_concat()
(in
Bio.HotRand
)
between()
(in
Analysis
)
blosum40
(in
Bio.SubsMat.MatrixInfo
)
BetweenPosition
(in
Bio.SeqFeature
)
blosum45
(in
Bio.SubsMat.MatrixInfo
)
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