Everything
All Classes
Bio.Affy.CelFile.CelConsumer
Bio.Affy.CelFile.CelParser
Bio.Affy.CelFile.CelRecord
Bio.Affy.CelFile.CelScanner
Bio.Align.AlignInfo.PSSM
Bio.Align.AlignInfo.SummaryInfo
Bio.Align.FormatConvert.FormatConverter
Bio.Align.Generic.Alignment
Bio.AlignAce.Applications.AlignAceCommandline
Bio.AlignAce.Applications.CompareAceCommandline
Bio.AlignAce.Motif.Motif
Bio.AlignAce.Parser.AlignAceConsumer
Bio.AlignAce.Parser.AlignAceParser
Bio.AlignAce.Parser.CompareAceConsumer
Bio.AlignAce.Parser.CompareAceParser
Bio.AlignAce.Scanner.AlignAceScanner
Bio.AlignAce.Scanner.CompareAceScanner
Bio.AlignIO.ClustalIO.ClustalIterator
Bio.AlignIO.ClustalIO.ClustalWriter
Bio.AlignIO.EmbossIO.EmbossIterator
Bio.AlignIO.EmbossIO.EmbossWriter
Bio.AlignIO.FastaIO.FastaM10Iterator
Bio.AlignIO.Interfaces.AlignmentIterator
Bio.AlignIO.Interfaces.AlignmentWriter
Bio.AlignIO.Interfaces.SequentialAlignmentWriter
Bio.AlignIO.NexusIO.NexusWriter
Bio.AlignIO.PhylipIO.PhylipIterator
Bio.AlignIO.PhylipIO.PhylipWriter
Bio.AlignIO.StockholmIO.StockholmIterator
Bio.AlignIO.StockholmIO.StockholmWriter
Bio.Alphabet.Alphabet
Bio.Alphabet.AlphabetEncoder
Bio.Alphabet.DNAAlphabet
Bio.Alphabet.Gapped
Bio.Alphabet.HasStopCodon
Bio.Alphabet.IUPAC.ExtendedIUPACDNA
Bio.Alphabet.IUPAC.ExtendedIUPACProtein
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA
Bio.Alphabet.IUPAC.IUPACProtein
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA
Bio.Alphabet.NucleotideAlphabet
Bio.Alphabet.ProteinAlphabet
Bio.Alphabet.RNAAlphabet
Bio.Alphabet.Reduced.HPModel
Bio.Alphabet.Reduced.Murphy10
Bio.Alphabet.Reduced.Murphy15
Bio.Alphabet.Reduced.Murphy4
Bio.Alphabet.Reduced.Murphy8
Bio.Alphabet.Reduced.PC5
Bio.Alphabet.SecondaryStructure
Bio.Alphabet.SingleLetterAlphabet
Bio.Alphabet.ThreeLetterProtein
Bio.Application.AbstractCommandline
Bio.Application.ApplicationResult
Bio.Blast.Applications.BlastallCommandline
Bio.Blast.Applications.FastacmdCommandline
Bio.Blast.NCBIStandalone.BlastErrorParser
Bio.Blast.NCBIStandalone.BlastParser
Bio.Blast.NCBIStandalone.Iterator
Bio.Blast.NCBIStandalone.LowQualityBlastError
Bio.Blast.NCBIStandalone.PSIBlastParser
Bio.Blast.NCBIStandalone.ShortQueryBlastError
Bio.Blast.NCBIWWW.BlastParser
Bio.Blast.NCBIXML.BlastParser
Bio.Blast.ParseBlastTable.BlastTableEntry
Bio.Blast.ParseBlastTable.BlastTableReader
Bio.Blast.ParseBlastTable.BlastTableRec
Bio.Blast.Record.Alignment
Bio.Blast.Record.Blast
Bio.Blast.Record.DatabaseReport
Bio.Blast.Record.Description
Bio.Blast.Record.HSP
Bio.Blast.Record.Header
Bio.Blast.Record.MultipleAlignment
Bio.Blast.Record.PSIBlast
Bio.Blast.Record.Parameters
Bio.Blast.Record.Round
Bio.CAPS.AlignmentHasDifferentLengthsError
Bio.CAPS.CAPSMap
Bio.CAPS.DifferentialCutsite
Bio.Clustalw.ClustalAlignment
Bio.Clustalw.MultipleAlignCL
Bio.Cluster.Record
Bio.Compass.Iterator
Bio.Compass.Record
Bio.Compass.RecordParser
Bio.Crystal.Chain
Bio.Crystal.Crystal
Bio.Crystal.CrystalError
Bio.Crystal.Hetero
Bio.DBXRef.BioformatDBName
Bio.DBXRef.DBXRef
Bio.DBXRef.UnknownDBName
Bio.Data.CodonTable.AmbiguousCodonTable
Bio.Data.CodonTable.AmbiguousForwardTable
Bio.Data.CodonTable.CodonTable
Bio.Data.CodonTable.NCBICodonTable
Bio.Data.CodonTable.NCBICodonTableDNA
Bio.Data.CodonTable.NCBICodonTableRNA
Bio.Data.CodonTable.TranslationError
Bio.Decode.DecodeParser
Bio.Decode.DecodeScanner
Bio.Decode.Float
Bio.Decode.Function
Bio.Decode.FunctionCall
Bio.Decode.FunctionCallChain
Bio.Decode.FunctionName
Bio.Decode.Integer
Bio.Decode.String
Bio.Decode.Token
Bio.Decode.ValueToken
Bio.DocSQL.Create
Bio.DocSQL.Insert
Bio.DocSQL.IterationCursor
Bio.DocSQL.NoInsertionError
Bio.DocSQL.Query
Bio.DocSQL.QueryAll
Bio.DocSQL.QueryAllFirstItem
Bio.DocSQL.QueryGeneric
Bio.DocSQL.QueryRow
Bio.DocSQL.QuerySingle
Bio.DocSQL.Update
Bio.EUtils.Config.DatabaseDict
Bio.EUtils.Config.DatabaseInfo
Bio.EUtils.DBIdsClient.BaseDBIdsRecordSet
Bio.EUtils.DBIdsClient.DBIdsClient
Bio.EUtils.DBIdsClient.DBIdsLookup
Bio.EUtils.DBIdsClient.DBIdsRecord
Bio.EUtils.DBIdsClient.PublicationDBIdsFetchMixin
Bio.EUtils.DBIdsClient.PublicationDBIdsRecord
Bio.EUtils.DBIdsClient.PublicationDBIdsRecordSet
Bio.EUtils.DBIdsClient.SequenceDBIdsFetchMixin
Bio.EUtils.DBIdsClient.SequenceDBIdsRecord
Bio.EUtils.DBIdsClient.SequenceDBIdsRecordSet
Bio.EUtils.DTDs.LinkOut.Attribute
Bio.EUtils.DTDs.LinkOut.Base
Bio.EUtils.DTDs.LinkOut.Brief
Bio.EUtils.DTDs.LinkOut.Database
Bio.EUtils.DTDs.LinkOut.ExclQuery
Bio.EUtils.DTDs.LinkOut.IconUrl
Bio.EUtils.DTDs.LinkOut.InclQuery
Bio.EUtils.DTDs.LinkOut.Link
Bio.EUtils.DTDs.LinkOut.LinkId
Bio.EUtils.DTDs.LinkOut.LinkSet
Bio.EUtils.DTDs.LinkOut.Name
Bio.EUtils.DTDs.LinkOut.NameAbbr
Bio.EUtils.DTDs.LinkOut.ObjId
Bio.EUtils.DTDs.LinkOut.ObjectList
Bio.EUtils.DTDs.LinkOut.ObjectSelector
Bio.EUtils.DTDs.LinkOut.ObjectUrl
Bio.EUtils.DTDs.LinkOut.Provider
Bio.EUtils.DTDs.LinkOut.ProviderId
Bio.EUtils.DTDs.LinkOut.Query
Bio.EUtils.DTDs.LinkOut.Rule
Bio.EUtils.DTDs.LinkOut.RuleToMany
Bio.EUtils.DTDs.LinkOut.Separator
Bio.EUtils.DTDs.LinkOut.SubObjectSelector
Bio.EUtils.DTDs.LinkOut.SubProvider
Bio.EUtils.DTDs.LinkOut.SubjectType
Bio.EUtils.DTDs.LinkOut.Url
Bio.EUtils.DTDs.LinkOut.UrlName
Bio.EUtils.DTDs.LinkOut.apad
Bio.EUtils.DTDs.LinkOut.normalize
Bio.EUtils.DTDs.LinkOut.pad
Bio.EUtils.DTDs.LinkOut.strip
Bio.EUtils.DTDs.LinkOut.subs
Bio.EUtils.DTDs.LinkOut.tolower
Bio.EUtils.DTDs.LinkOut.toupper
Bio.EUtils.DTDs.eInfo_020511.Count
Bio.EUtils.DTDs.eInfo_020511.DbInfo
Bio.EUtils.DTDs.eInfo_020511.DbList
Bio.EUtils.DTDs.eInfo_020511.DbName
Bio.EUtils.DTDs.eInfo_020511.DbTo
Bio.EUtils.DTDs.eInfo_020511.Descriptor
Bio.EUtils.DTDs.eInfo_020511.ERROR
Bio.EUtils.DTDs.eInfo_020511.Field
Bio.EUtils.DTDs.eInfo_020511.FiledList
Bio.EUtils.DTDs.eInfo_020511.Hierarchy
Bio.EUtils.DTDs.eInfo_020511.IsDate
Bio.EUtils.DTDs.eInfo_020511.IsNumerical
Bio.EUtils.DTDs.eInfo_020511.Link
Bio.EUtils.DTDs.eInfo_020511.LinkList
Bio.EUtils.DTDs.eInfo_020511.Menu
Bio.EUtils.DTDs.eInfo_020511.MenuName
Bio.EUtils.DTDs.eInfo_020511.Name
Bio.EUtils.DTDs.eInfo_020511.SingleToken
Bio.EUtils.DTDs.eInfo_020511.TermCount
Bio.EUtils.DTDs.eInfo_020511.eInfoResult
Bio.EUtils.DTDs.eLink_020511.Attribute
Bio.EUtils.DTDs.eLink_020511.DbFrom
Bio.EUtils.DTDs.eLink_020511.DbTo
Bio.EUtils.DTDs.eLink_020511.ERROR
Bio.EUtils.DTDs.eLink_020511.IconUrl
Bio.EUtils.DTDs.eLink_020511.Id
Bio.EUtils.DTDs.eLink_020511.IdCheckList
Bio.EUtils.DTDs.eLink_020511.IdList
Bio.EUtils.DTDs.eLink_020511.IdUrlList
Bio.EUtils.DTDs.eLink_020511.IdUrlSet
Bio.EUtils.DTDs.eLink_020511.Info
Bio.EUtils.DTDs.eLink_020511.Link
Bio.EUtils.DTDs.eLink_020511.LinkName
Bio.EUtils.DTDs.eLink_020511.LinkSet
Bio.EUtils.DTDs.eLink_020511.LinkSetDb
Bio.EUtils.DTDs.eLink_020511.Name
Bio.EUtils.DTDs.eLink_020511.NameAbbr
Bio.EUtils.DTDs.eLink_020511.ObjUrl
Bio.EUtils.DTDs.eLink_020511.Provider
Bio.EUtils.DTDs.eLink_020511.Score
Bio.EUtils.DTDs.eLink_020511.SubjectType
Bio.EUtils.DTDs.eLink_020511.Url
Bio.EUtils.DTDs.eLink_020511.eLinkResult
Bio.EUtils.DTDs.ePost_020511.ERROR
Bio.EUtils.DTDs.ePost_020511.Id
Bio.EUtils.DTDs.ePost_020511.InvalidIdList
Bio.EUtils.DTDs.ePost_020511.QueryKey
Bio.EUtils.DTDs.ePost_020511.WebEnv
Bio.EUtils.DTDs.ePost_020511.ePostResult
Bio.EUtils.DTDs.eSearch_020511.Count
Bio.EUtils.DTDs.eSearch_020511.ERROR
Bio.EUtils.DTDs.eSearch_020511.ErrorList
Bio.EUtils.DTDs.eSearch_020511.Explode
Bio.EUtils.DTDs.eSearch_020511.Field
Bio.EUtils.DTDs.eSearch_020511.FieldNotFound
Bio.EUtils.DTDs.eSearch_020511.From
Bio.EUtils.DTDs.eSearch_020511.Id
Bio.EUtils.DTDs.eSearch_020511.IdList
Bio.EUtils.DTDs.eSearch_020511.OP
Bio.EUtils.DTDs.eSearch_020511.OutputMessage
Bio.EUtils.DTDs.eSearch_020511.PhraseIgnored
Bio.EUtils.DTDs.eSearch_020511.PhraseNotFound
Bio.EUtils.DTDs.eSearch_020511.QueryKey
Bio.EUtils.DTDs.eSearch_020511.QueryTranslation
Bio.EUtils.DTDs.eSearch_020511.QuotedPhraseNotFound
Bio.EUtils.DTDs.eSearch_020511.RetMax
Bio.EUtils.DTDs.eSearch_020511.RetStart
Bio.EUtils.DTDs.eSearch_020511.Term
Bio.EUtils.DTDs.eSearch_020511.TermSet
Bio.EUtils.DTDs.eSearch_020511.To
Bio.EUtils.DTDs.eSearch_020511.Translation
Bio.EUtils.DTDs.eSearch_020511.TranslationSet
Bio.EUtils.DTDs.eSearch_020511.TranslationStack
Bio.EUtils.DTDs.eSearch_020511.WarningList
Bio.EUtils.DTDs.eSearch_020511.WebEnv
Bio.EUtils.DTDs.eSearch_020511.eSearchResult
Bio.EUtils.DTDs.eSummary_020511.DocSum
Bio.EUtils.DTDs.eSummary_020511.ERROR
Bio.EUtils.DTDs.eSummary_020511.Id
Bio.EUtils.DTDs.eSummary_020511.Item
Bio.EUtils.DTDs.eSummary_020511.eSummaryResult
Bio.EUtils.Datatypes.And
Bio.EUtils.Datatypes.BinaryOp
Bio.EUtils.Datatypes.CheckLinkSet
Bio.EUtils.Datatypes.DBIds
Bio.EUtils.Datatypes.Date
Bio.EUtils.Datatypes.DateRange
Bio.EUtils.Datatypes.EUtilsError
Bio.EUtils.Datatypes.EUtilsSearchError
Bio.EUtils.Datatypes.ErrorProblem
Bio.EUtils.Datatypes.Expression
Bio.EUtils.Datatypes.FieldNotFound
Bio.EUtils.Datatypes.IdCheck
Bio.EUtils.Datatypes.IdUrlSet
Bio.EUtils.Datatypes.Link
Bio.EUtils.Datatypes.LinkSetDb
Bio.EUtils.Datatypes.LinksLinkSet
Bio.EUtils.Datatypes.NeighborLinkSet
Bio.EUtils.Datatypes.Not
Bio.EUtils.Datatypes.ObjUrl
Bio.EUtils.Datatypes.Or
Bio.EUtils.Datatypes.OutputMessage
Bio.EUtils.Datatypes.PhraseIgnored
Bio.EUtils.Datatypes.PhraseNotFound
Bio.EUtils.Datatypes.PostResult
Bio.EUtils.Datatypes.Problem
Bio.EUtils.Datatypes.Provider
Bio.EUtils.Datatypes.QuotedPhraseNotFound
Bio.EUtils.Datatypes.Range
Bio.EUtils.Datatypes.SearchResult
Bio.EUtils.Datatypes.Summary
Bio.EUtils.Datatypes.Term
Bio.EUtils.Datatypes.WarningProblem
Bio.EUtils.Datatypes.WithinNDays
Bio.EUtils.HistoryClient.BaseHistoryRecordSet
Bio.EUtils.HistoryClient.HistoryClient
Bio.EUtils.HistoryClient.HistoryCookie
Bio.EUtils.HistoryClient.HistoryLookup
Bio.EUtils.HistoryClient.HistoryRecord
Bio.EUtils.HistoryClient.PublicationHistoryFetchMixin
Bio.EUtils.HistoryClient.PublicationHistoryRecord
Bio.EUtils.HistoryClient.PublicationHistoryRecordSet
Bio.EUtils.HistoryClient.SequenceHistoryFetchMixin
Bio.EUtils.HistoryClient.SequenceHistoryRecord
Bio.EUtils.HistoryClient.SequenceHistoryRecordSet
Bio.EUtils.Mixins.LinkMixin
Bio.EUtils.Mixins.PublicationFetchMixin
Bio.EUtils.Mixins.SequenceFetchMixin
Bio.EUtils.MultiDict.OrderedMultiDict
Bio.EUtils.MultiDict.UnorderedMultiDict
Bio.EUtils.POM.AttributeList
Bio.EUtils.POM.CDATA
Bio.EUtils.POM.Comment
Bio.EUtils.POM.ContentModel
Bio.EUtils.POM.DTDConsumerForSourceGeneration
Bio.EUtils.POM.ENTITIES
Bio.EUtils.POM.ENTITY
Bio.EUtils.POM.ElementNode
Bio.EUtils.POM.Enumeration
Bio.EUtils.POM.Fragments
Bio.EUtils.POM.ID
Bio.EUtils.POM.IDREF
Bio.EUtils.POM.IDREFS
Bio.EUtils.POM.IndentedText
Bio.EUtils.POM.NMTOKEN
Bio.EUtils.POM.NMTOKENS
Bio.EUtils.POM.ObjectParserHandler
Bio.EUtils.POM.POMDocument
Bio.EUtils.POM.Text
Bio.EUtils.POM.ValidationError
Bio.EUtils.POM.XMLAttribute
Bio.EUtils.ReseekFile.ReseekFile
Bio.EUtils.ThinClient.ThinClient
Bio.EUtils.parse.GetObject
Bio.EUtils.parse.UsePOMParser
Bio.EUtils.sourcegen.ClassHolder
Bio.EUtils.sourcegen.FunctionHolder
Bio.EUtils.sourcegen.MethodHolder
Bio.EUtils.sourcegen.SourceFile
Bio.EUtils.sourcegen.SourceGen
Bio.Emboss.Applications.DiffseqCommandline
Bio.Emboss.Applications.EConsenseCommandline
Bio.Emboss.Applications.EInvertedCommandline
Bio.Emboss.Applications.ENeighborCommandline
Bio.Emboss.Applications.EProtDistCommandline
Bio.Emboss.Applications.EProtParsCommandline
Bio.Emboss.Applications.ESeqBootCommandline
Bio.Emboss.Applications.ETandemCommandline
Bio.Emboss.Applications.Est2GenomeCommandline
Bio.Emboss.Applications.FuzznucCommandline
Bio.Emboss.Applications.PalindromeCommandline
Bio.Emboss.Applications.Primer3Commandline
Bio.Emboss.Applications.PrimerSearchCommandline
Bio.Emboss.Applications.TranalignCommandline
Bio.Emboss.Applications.WaterCommandline
Bio.Emboss.Primer.Primer3Parser
Bio.Emboss.Primer.Primer3Primers
Bio.Emboss.Primer.Primer3Record
Bio.Emboss.Primer.PrimerSearchAmplifier
Bio.Emboss.Primer.PrimerSearchInputRecord
Bio.Emboss.Primer.PrimerSearchOutputRecord
Bio.Emboss.Primer.PrimerSearchParser
Bio.Emboss.Primer3.Primers
Bio.Emboss.Primer3.Record
Bio.Emboss.PrimerSearch.Amplifier
Bio.Emboss.PrimerSearch.InputRecord
Bio.Emboss.PrimerSearch.OutputRecord
Bio.Entrez.Parser.DataHandler
Bio.Entrez.Parser.DictionaryElement
Bio.Entrez.Parser.IntegerElement
Bio.Entrez.Parser.ListElement
Bio.Entrez.Parser.StringElement
Bio.Entrez.Parser.StructureElement
Bio.Entrez.Parser.UnicodeElement
Bio.Enzyme.DataRecord
Bio.Enzyme.EnzymeRecord
Bio.Enzyme.Iterator
Bio.Enzyme.RecordParser
Bio.FSSP.FSSPAlignDict
Bio.FSSP.FSSPAlignRec
Bio.FSSP.FSSPHeader
Bio.FSSP.FSSPSumDict
Bio.FSSP.FSSPSumRec
Bio.FSSP.FSSPTools.FSSPAlign
Bio.FSSP.FSSPTools.FSSPMultAlign
Bio.FSSP.PosAlign
Bio.FSSP.fssp_rec.align
Bio.FSSP.fssp_rec.fff_rec
Bio.Fasta.FastaAlign.FastaAlignment
Bio.Fasta.Iterator
Bio.Fasta.Record
Bio.Fasta.RecordParser
Bio.Fasta.SequenceParser
Bio.File.SGMLHandle
Bio.File.SGMLStripper
Bio.File.SGMLStripper.MyParser
Bio.File.UndoHandle
Bio.FilteredReader.FilteredReader
Bio.GA.Crossover.General.SafeFitnessCrossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover
Bio.GA.Crossover.GeneralPoint.TwoCrossover
Bio.GA.Crossover.Point.SinglePointCrossover
Bio.GA.Crossover.TwoPoint.TwoPointCrossover
Bio.GA.Crossover.Uniform.UniformCrossover
Bio.GA.Evolver.GenerationEvolver
Bio.GA.Evolver.SteadyStateEvolver
Bio.GA.Mutation.General.SafeFitnessMutation
Bio.GA.Mutation.Simple.ConversionMutation
Bio.GA.Mutation.Simple.SinglePositionMutation
Bio.GA.Organism.Organism
Bio.GA.Repair.Stabilizing.AmbiguousRepair
Bio.GA.Selection.Abstract.AbstractSelection
Bio.GA.Selection.Diversity.DiversitySelection
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection
Bio.GA.Selection.Tournament.TournamentSelection
Bio.GFF.Connection
Bio.GFF.Feature
Bio.GFF.FeatureAggregate
Bio.GFF.FeatureQuery
Bio.GFF.FeatureQueryRow
Bio.GFF.GenericTools.AppendableListDictionary
Bio.GFF.GenericTools.ArgsParser
Bio.GFF.GenericTools.ForgivingDictionary
Bio.GFF.GenericTools.Surrogate
Bio.GFF.GenericTools.SurrogateNotInitedError
Bio.GFF.GenericTools.TempFile
Bio.GFF.GenericTools.VerboseDict
Bio.GFF.GenericTools.VerboseList
Bio.GFF.RetrieveSeqname
Bio.GFF.Segment
Bio.GFF.binning.Meta
Bio.GFF.easy.FeatureDict
Bio.GFF.easy.Location
Bio.GFF.easy.LocationFromCoords
Bio.GFF.easy.LocationFromString
Bio.GFF.easy.LocationJoin
Bio.GenBank.FeatureParser
Bio.GenBank.Iterator
Bio.GenBank.LocationParser.AbsoluteLocation
Bio.GenBank.LocationParser.Between
Bio.GenBank.LocationParser.FeatureName
Bio.GenBank.LocationParser.Function
Bio.GenBank.LocationParser.HighBound
Bio.GenBank.LocationParser.Integer
Bio.GenBank.LocationParser.LocationParser
Bio.GenBank.LocationParser.LocationScanner
Bio.GenBank.LocationParser.LowBound
Bio.GenBank.LocationParser.Path
Bio.GenBank.LocationParser.Range
Bio.GenBank.LocationParser.Symbol
Bio.GenBank.LocationParser.Token
Bio.GenBank.LocationParser.TwoBound
Bio.GenBank.LocationParser.UnsignedInteger
Bio.GenBank.LocationParserError
Bio.GenBank.NCBIDictionary
Bio.GenBank.ParserFailureError
Bio.GenBank.Record.Feature
Bio.GenBank.Record.Qualifier
Bio.GenBank.Record.Record
Bio.GenBank.Record.Reference
Bio.GenBank.RecordParser
Bio.GenBank.Scanner.EmblScanner
Bio.GenBank.Scanner.GenBankScanner
Bio.GenBank.Scanner.InsdcScanner
Bio.GenBank.utils.FeatureValueCleaner
Bio.Geo.Record.Record
Bio.Graphics.BasicChromosome.Chromosome
Bio.Graphics.BasicChromosome.ChromosomeSegment
Bio.Graphics.BasicChromosome.Organism
Bio.Graphics.BasicChromosome.TelomereSegment
Bio.Graphics.Comparative.ComparativeScatterPlot
Bio.Graphics.DisplayRepresentation.ChromosomeCounts
Bio.Graphics.Distribution.BarChartDistribution
Bio.Graphics.Distribution.DistributionPage
Bio.Graphics.Distribution.LineDistribution
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms
Bio.HMM.DynamicProgramming.LogDPAlgorithms
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms
Bio.HMM.MarkovModel.HiddenMarkovModel
Bio.HMM.MarkovModel.MarkovModelBuilder
Bio.HMM.Trainer.AbstractTrainer
Bio.HMM.Trainer.BaumWelchTrainer
Bio.HMM.Trainer.KnownStateTrainer
Bio.HMM.Trainer.TrainingSequence
Bio.HotRand.HotCache
Bio.HotRand.HotRandom
Bio.IntelliGenetics.IntelliGeneticsReader
Bio.IntelliGenetics.Iterator
Bio.IntelliGenetics.Record.Record
Bio.IntelliGenetics.RecordParser
Bio.InterPro.InterProParser
Bio.InterPro.Record
Bio.KDTree.KDTree.KDTree
Bio.KEGG.Compound.Record
Bio.KEGG.Enzyme.Record
Bio.LogisticRegression.LogisticRegression
Bio.MEME.Motif.Instance
Bio.MEME.Motif.MEMEMotif
Bio.MEME.Motif.Motif
Bio.MEME.Parser.MASTParser
Bio.MEME.Parser.MASTRecord
Bio.MEME.Parser.MEMEParser
Bio.MEME.Parser.MEMERecord
Bio.MarkovModel.MarkovModel
Bio.MaxEntropy.MaxEntropy
Bio.Medline.Iterator
Bio.Medline.Record
Bio.Medline.RecordParser
Bio.MetaTool.Iterator
Bio.MetaTool.Record.Metabolite
Bio.MetaTool.Record.MetaboliteRole
Bio.MetaTool.Record.PathwayTransform
Bio.MetaTool.Record.Record
Bio.MetaTool.RecordParser
Bio.Mindy.BaseDB.DictLookup
Bio.Mindy.BaseDB.OpenDB
Bio.Mindy.BaseDB.WriteDB
Bio.Mindy.BerkeleyDB.BerkeleyDB
Bio.Mindy.BerkeleyDB.PrimaryNamespace
Bio.Mindy.BerkeleyDB.SecondaryNamespace
Bio.Mindy.FlatDB.BaseFlatDB
Bio.Mindy.FlatDB.BisectFile
Bio.Mindy.FlatDB.DiskFlatDB
Bio.Mindy.FlatDB.MemoryFlatDB
Bio.Mindy.FlatDB.PrimaryNamespace
Bio.Mindy.FlatDB.PrimaryTable
Bio.Mindy.FlatDB.SecondaryNamespace
Bio.Mindy.FlatDB.SecondaryTable
Bio.Mindy.Location.Location
Bio.Mindy.SimpleSeqRecord.BaseSeqRecordIndexer
Bio.Mindy.SimpleSeqRecord.FixDocumentBuilder
Bio.Mindy.SimpleSeqRecord.FunctionIndexer
Bio.Mindy.SimpleSeqRecord.SimpleIndexer
Bio.Mindy.XPath.GrabXPathNodes
Bio.MissingExternalDependencyError
Bio.NBRF.Iterator
Bio.NBRF.Record.Record
Bio.NBRF.RecordParser
Bio.NMR.xpktools.Peaklist
Bio.NMR.xpktools.XpkEntry
Bio.NaiveBayes.NaiveBayes
Bio.Ndb.NdbParser
Bio.Ndb.Record
Bio.NetCatch.ExtractUrls
Bio.NetCatch.NetCatch
Bio.NetCatch.Url
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork
Bio.NeuralNetwork.Gene.Motif.MotifCoder
Bio.NeuralNetwork.Gene.Motif.MotifFinder
Bio.NeuralNetwork.Gene.Pattern.PatternIO
Bio.NeuralNetwork.Gene.Pattern.PatternRepository
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator
Bio.NeuralNetwork.Gene.Schema.Schema
Bio.NeuralNetwork.Gene.Schema.SchemaCoder
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet
Bio.NeuralNetwork.Gene.Schema.SchemaFactory
Bio.NeuralNetwork.Gene.Schema.SchemaFinder
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher
Bio.NeuralNetwork.Gene.Signature.SignatureCoder
Bio.NeuralNetwork.Gene.Signature.SignatureFinder
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop
Bio.NeuralNetwork.Training.ExampleManager
Bio.NeuralNetwork.Training.TrainingExample
Bio.Nexus.Nexus.Block
Bio.Nexus.Nexus.CharBuffer
Bio.Nexus.Nexus.Commandline
Bio.Nexus.Nexus.Nexus
Bio.Nexus.Nexus.NexusError
Bio.Nexus.Nexus.StepMatrix
Bio.Nexus.Nodes.Chain
Bio.Nexus.Nodes.ChainException
Bio.Nexus.Nodes.Node
Bio.Nexus.Nodes.NodeException
Bio.Nexus.Trees.NodeData
Bio.Nexus.Trees.Tree
Bio.Nexus.Trees.TreeError
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap
Bio.PDB.Atom.Atom
Bio.PDB.Atom.DisorderedAtom
Bio.PDB.Chain.Chain
Bio.PDB.DSSP'.DSSP
Bio.PDB.Dice.ChainSelector
Bio.PDB.Entity.DisorderedEntityWrapper
Bio.PDB.Entity.Entity
Bio.PDB.FragmentMapper'.Fragment
Bio.PDB.FragmentMapper'.FragmentMapper
Bio.PDB.HSExposure.ExposureCN
Bio.PDB.HSExposure.HSExposureCA
Bio.PDB.HSExposure.HSExposureCB
Bio.PDB.MMCIF2Dict.MMCIF2Dict
Bio.PDB.MMCIFParser.MMCIFParser
Bio.PDB.Model.Model
Bio.PDB.NACCESS.NACCESS
Bio.PDB.NACCESS.NACCESS_atomic
Bio.PDB.NeighborSearch.NeighborSearch
Bio.PDB.PDBExceptions.PDBConstructionException
Bio.PDB.PDBExceptions.PDBException
Bio.PDB.PDBIO'.PDBIO
Bio.PDB.PDBIO'.Select
Bio.PDB.PDBList'.PDBList
Bio.PDB.PDBParser'.PDBParser
Bio.PDB.PSEA.PSEA
Bio.PDB.Polypeptide.CaPPBuilder
Bio.PDB.Polypeptide.PPBuilder
Bio.PDB.Polypeptide.Polypeptide
Bio.PDB.Residue.DisorderedResidue
Bio.PDB.Residue.Residue
Bio.PDB.ResidueDepth'.ResidueDepth
Bio.PDB.Structure.Structure
Bio.PDB.StructureAlignment'.StructureAlignment
Bio.PDB.StructureBuilder.StructureBuilder
Bio.PDB.Superimposer'.Superimposer
Bio.PDB.Vector'.Vector
Bio.ParserSupport.AbstractConsumer
Bio.ParserSupport.AbstractParser
Bio.ParserSupport.EventGenerator
Bio.ParserSupport.SGMLStrippingConsumer
Bio.ParserSupport.TaggingConsumer
Bio.Parsers.spark.GenericASTBuilder
Bio.Parsers.spark.GenericASTMatcher
Bio.Parsers.spark.GenericASTTraversal
Bio.Parsers.spark.GenericASTTraversalPruningException
Bio.Parsers.spark.GenericParser
Bio.Parsers.spark.GenericScanner
Bio.Pathway.Interaction
Bio.Pathway.Network
Bio.Pathway.Reaction
Bio.Pathway.Rep.Graph.Graph
Bio.Pathway.Rep.HashSet.HashSet
Bio.Pathway.Rep.MultiGraph.MultiGraph
Bio.Pathway.System
Bio.PopGen.Async.Async
Bio.PopGen.Async.DirectoryRetriever
Bio.PopGen.Async.FileRetriever
Bio.PopGen.Async.Local.Local
Bio.PopGen.FDist.Async.FDistAsync
Bio.PopGen.FDist.Async.SplitFDist
Bio.PopGen.FDist.Controller.FDistController
Bio.PopGen.FDist.Record
Bio.PopGen.FDist.RecordParser
Bio.PopGen.GenePop.Record
Bio.PopGen.GenePop.RecordParser
Bio.PopGen.SimCoal.Async.SimCoalCache
Bio.PopGen.SimCoal.Cache.SimCoalCache
Bio.PopGen.SimCoal.Controller.SimCoalController
Bio.PropertyManager.CreateDict
Bio.PropertyManager.PropertyManager
Bio.Prosite.Dictionary
Bio.Prosite.ExPASyDictionary
Bio.Prosite.Iterator
Bio.Prosite.Pattern.Prosite
Bio.Prosite.Pattern.PrositeAlphabet
Bio.Prosite.Pattern.PrositeMatch
Bio.Prosite.Pattern.PrositeTerm
Bio.Prosite.PatternHit
Bio.Prosite.Prodoc.Dictionary
Bio.Prosite.Prodoc.ExPASyDictionary
Bio.Prosite.Prodoc.Iterator
Bio.Prosite.Prodoc.Record
Bio.Prosite.Prodoc.RecordParser
Bio.Prosite.Prodoc.Reference
Bio.Prosite.Record
Bio.Prosite.RecordParser
Bio.PubMed.Dictionary
Bio.Restriction.PrintFormat.PrintFormat
Bio.Restriction.Restriction.AbstractCut
Bio.Restriction.Restriction.Ambiguous
Bio.Restriction.Restriction.Analysis
Bio.Restriction.Restriction.Blunt
Bio.Restriction.Restriction.Commercially_available
Bio.Restriction.Restriction.Defined
Bio.Restriction.Restriction.FormattedSeq
Bio.Restriction.Restriction.Meth_Dep
Bio.Restriction.Restriction.Meth_Undep
Bio.Restriction.Restriction.NoCut
Bio.Restriction.Restriction.NonPalindromic
Bio.Restriction.Restriction.NotDefined
Bio.Restriction.Restriction.Not_available
Bio.Restriction.Restriction.OneCut
Bio.Restriction.Restriction.Ov3
Bio.Restriction.Restriction.Ov5
Bio.Restriction.Restriction.Palindromic
Bio.Restriction.Restriction.RestrictionBatch
Bio.Restriction.Restriction.RestrictionType
Bio.Restriction.Restriction.TwoCuts
Bio.Restriction.Restriction.Unknown
Bio.SCOP.Astral
Bio.SCOP.Cla.Index
Bio.SCOP.Cla.Iterator
Bio.SCOP.Cla.Parser
Bio.SCOP.Cla.Record
Bio.SCOP.Des.Iterator
Bio.SCOP.Des.Parser
Bio.SCOP.Des.Record
Bio.SCOP.Dom.Iterator
Bio.SCOP.Dom.Parser
Bio.SCOP.Dom.Record
Bio.SCOP.Domain
Bio.SCOP.FileIndex.FileIndex
Bio.SCOP.FileIndex.defaultdict
Bio.SCOP.Hie.Iterator
Bio.SCOP.Hie.Parser
Bio.SCOP.Hie.Record
Bio.SCOP.Node
Bio.SCOP.Raf.Iterator
Bio.SCOP.Raf.Parser
Bio.SCOP.Raf.Res
Bio.SCOP.Raf.SeqMap
Bio.SCOP.Raf.SeqMapIndex
Bio.SCOP.Residues'.Residues
Bio.SCOP.Scop
Bio.SVDSuperimposer.SVDSuperimposer'.SVDSuperimposer
Bio.Saf.Iterator
Bio.Saf.Record.Record
Bio.Saf.RecordParser
Bio.Search.Algorithm
Bio.Search.Database
Bio.Search.HSP
Bio.Search.HSPSeq
Bio.Search.Hit
Bio.Search.HomologySeq
Bio.Search.Query
Bio.Search.Search
Bio.Search.TableInfo
Bio.Seq.MutableSeq
Bio.Seq.Seq
Bio.SeqFeature.AbstractPosition
Bio.SeqFeature.AfterPosition
Bio.SeqFeature.BeforePosition
Bio.SeqFeature.BetweenPosition
Bio.SeqFeature.ExactPosition
Bio.SeqFeature.FeatureLocation
Bio.SeqFeature.OneOfPosition
Bio.SeqFeature.PositionGap
Bio.SeqFeature.Reference
Bio.SeqFeature.SeqFeature
Bio.SeqFeature.WithinPosition
Bio.SeqIO.FastaIO.FastaWriter
Bio.SeqIO.InsdcIO.GenBankWriter
Bio.SeqIO.Interfaces.InterlacedSequenceIterator
Bio.SeqIO.Interfaces.SequenceIterator
Bio.SeqIO.Interfaces.SequenceWriter
Bio.SeqIO.Interfaces.SequentialSequenceWriter
Bio.SeqIO.TabIO.TabWriter
Bio.SeqRecord.SeqRecord
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint
Bio.SeqUtils.MissingTable
Bio.SeqUtils.ProtParam.ProteinAnalysis
Bio.SeqUtils.ProteinX
Bio.Sequencing.Ace.ACEFileRecord
Bio.Sequencing.Ace.ACEParser
Bio.Sequencing.Ace.Contig
Bio.Sequencing.Ace.Iterator
Bio.Sequencing.Ace.Reads
Bio.Sequencing.Ace.RecordParser
Bio.Sequencing.Ace.af
Bio.Sequencing.Ace.bs
Bio.Sequencing.Ace.ct
Bio.Sequencing.Ace.ds
Bio.Sequencing.Ace.qa
Bio.Sequencing.Ace.rd
Bio.Sequencing.Ace.rt
Bio.Sequencing.Ace.wa
Bio.Sequencing.Ace.wr
Bio.Sequencing.Phd.Iterator
Bio.Sequencing.Phd.Record
Bio.Sequencing.Phd.RecordParser
Bio.Std.StdTerm
Bio.StdHandler.ConvertDispatchHandler
Bio.StdHandler.ConvertHandler
Bio.StdHandler.Feature
Bio.StdHandler.Handle_dbid
Bio.StdHandler.Handle_dbxref
Bio.StdHandler.Handle_description
Bio.StdHandler.Handle_feature_location
Bio.StdHandler.Handle_feature_qualifier
Bio.StdHandler.Handle_features
Bio.StdHandler.Handle_hsp
Bio.StdHandler.Handle_hsp_seqalign
Bio.StdHandler.Handle_search_header
Bio.StdHandler.Handle_search_info
Bio.StdHandler.Handle_search_table
Bio.StdHandler.Handle_sequence
Bio.StdHandler.RecognizeHandler
Bio.SubsMat.BadMatrix
Bio.SubsMat.FreqTable.FreqTable
Bio.SubsMat.SeqMat
Bio.SwissProt.KeyWList.ListParser
Bio.SwissProt.KeyWList.Record
Bio.SwissProt.SProt.Dictionary
Bio.SwissProt.SProt.ExPASyDictionary
Bio.SwissProt.SProt.Iterator
Bio.SwissProt.SProt.Record
Bio.SwissProt.SProt.RecordParser
Bio.SwissProt.SProt.Reference
Bio.SwissProt.SProt.SequenceParser
Bio.Transcribe.Transcribe
Bio.Translate.Translator
Bio.UniGene.Iterator
Bio.UniGene.RecordParser
Bio.UniGene.UnigeneProtsimRecord
Bio.UniGene.UnigeneRecord
Bio.UniGene.UnigeneSTSRecord
Bio.UniGene.UnigeneSequenceRecord
Bio.WWW.RequestLimiter
Bio.Wise.dnal.Statistics
Bio.Wise.psw.Alignment
Bio.Wise.psw.AlignmentColumn
Bio.Wise.psw.AlignmentColumnFullException
Bio.Wise.psw.ColumnUnit
Bio.Writer.Writer
Bio.kNN.kNN
Bio.pairwise2.affine_penalty
Bio.pairwise2.dictionary_match
Bio.pairwise2.identity_match
Bio.writers.SeqRecord.embl.WriteEmbl
Bio.writers.SeqRecord.empty.WriteEmpty
Bio.writers.SeqRecord.fasta.WriteFasta
BioSQL.BioSeq.DBSeq
BioSQL.BioSeq.DBSeqRecord
BioSQL.BioSeqDatabase.Adaptor
BioSQL.BioSeqDatabase.BioSeqDatabase
BioSQL.BioSeqDatabase.DBServer
BioSQL.DBUtils.Generic_dbutils
BioSQL.DBUtils.Mysql_dbutils
BioSQL.DBUtils.Pgdb_dbutils
BioSQL.DBUtils.Psycopg2_dbutils
BioSQL.DBUtils.Psycopg_dbutils
BioSQL.Loader.DatabaseLoader
BioSQL.Loader.DatabaseRemover
Martel.Dispatch.Callback
Martel.Dispatch.DispatchHandler
Martel.Dispatch.Dispatcher
Martel.Dispatch.Multicall
Martel.Dispatch.MulticallEnd
Martel.Dispatch.MulticallStart
Martel.Dispatch.RemapEnd
Martel.Dispatch.RemapStart
Martel.Expression.Alt
Martel.Expression.Any
Martel.Expression.AnyEol
Martel.Expression.Assert
Martel.Expression.AtBeginning
Martel.Expression.AtEnd
Martel.Expression.Debug
Martel.Expression.Dot
Martel.Expression.Expression
Martel.Expression.ExpressionList
Martel.Expression.FastFeature
Martel.Expression.Group
Martel.Expression.GroupRef
Martel.Expression.HeaderFooter
Martel.Expression.Literal
Martel.Expression.MaxRepeat
Martel.Expression.NullOp
Martel.Expression.ParseRecords
Martel.Expression.PassThrough
Martel.Expression.Seq
Martel.Expression.Str
Martel.Generate.CheckAssert
Martel.Generate.CheckAssertNot
Martel.Generate.CheckGroupRef
Martel.Generate.GeneratorState
Martel.Generate.HandleRepeatCount
Martel.Generate.SetGroupValue
Martel.Generate.print_debug
Martel.Generate.print_info
Martel.IterParser.IterHeaderFooter
Martel.IterParser.IterRecords
Martel.Iterator.EventStream
Martel.Iterator.HeaderFooterEventStream
Martel.Iterator.Iterate
Martel.Iterator.Iterator
Martel.Iterator.IteratorHeaderFooter
Martel.Iterator.IteratorRecords
Martel.Iterator.RecordEventStream
Martel.Iterator.StoreEvents
Martel.LAX.ElementInfo
Martel.LAX.LAX
Martel.LAX.LAXAttrs
Martel.LAX.LAXPositions
Martel.Parser.HeaderFooterParser
Martel.Parser.MartelAttributeList
Martel.Parser.Parser
Martel.Parser.ParserException
Martel.Parser.ParserIncompleteException
Martel.Parser.ParserPositionException
Martel.Parser.ParserRecordException
Martel.Parser.RecordParser
Martel.RecordReader.CountLines
Martel.RecordReader.EndsWith
Martel.RecordReader.Everything
Martel.RecordReader.Nothing
Martel.RecordReader.ReaderError
Martel.RecordReader.RecordReader
Martel.RecordReader.StartsWith
Martel.RecordReader.Until
Martel.convert_re.GroupNames
Martel.msre_constants.error
Martel.msre_parse.Pattern
Martel.msre_parse.SubPattern
Martel.msre_parse.Tokenizer
Martel.setup.my_install
Martel.setup.run_install_tests
Martel.setup.run_local_tests
Martel.test.support.CheckGood
Martel.test.support.Dump
Martel.test.support.Storage
Martel.test.test_Parser.CountErrors
Martel.test.test_Parser.CountRecords
Martel.test.test_attrs.GrabElements
Martel.test.test_delimiter.CatchFields
Martel.test.test_macros.Capture
Martel.test.test_optimize.GetErrorPos
All Functions
Bio.Align.AlignInfo.print_info_content
Bio.AlignAce.AlignAceStandalone.AlignAce
Bio.AlignAce.CompareAceStandalone.CompareAce
Bio.AlignIO.NexusIO.NexusIterator
Bio.AlignIO.parse
Bio.AlignIO.read
Bio.AlignIO.write
Bio.Application.generic_run
Bio.Blast.NCBIStandalone.blastall
Bio.Blast.NCBIStandalone.blastpgp
Bio.Blast.NCBIStandalone.rpsblast
Bio.Blast.NCBIWWW.qblast
Bio.Blast.NCBIXML.parse
Bio.Clustalw.do_alignment
Bio.Clustalw.parse_file
Bio.Cluster.read
Bio.Crystal.validate_key
Bio.Crystal.wrap_line
Bio.DBXRef.from_parser
Bio.Data.CodonTable.list_ambiguous_codons
Bio.Data.CodonTable.list_possible_proteins
Bio.Data.CodonTable.make_back_table
Bio.Data.CodonTable.register_ncbi_table
Bio.Decode.chomp
Bio.Decode.chompchomp
Bio.Decode.fixspaces
Bio.Decode.join_english
Bio.Decode.join_fixspaces
Bio.Decode.lchomp
Bio.Decode.make_decoder
Bio.Decode.make_typechecked_decoder
Bio.Decode.parse
Bio.Decode.safe_int
Bio.Decode.scan
Bio.Decode.test
Bio.Decode.tr
Bio.Decode.unescape_C
Bio.EUtils.DBIds
Bio.EUtils.DBIdsClient.from_dbids
Bio.EUtils.ReseekFile.prepare_input_source
Bio.EUtils.ReseekFile.test
Bio.EUtils.ReseekFile.test_reads
Bio.EUtils.dtd2py.compile_file
Bio.EUtils.dtd2py.do_it
Bio.EUtils.dtd2py.main
Bio.EUtils.parse.convert_summary_Date
Bio.EUtils.parse.convert_summary_Date_string
Bio.EUtils.parse.convert_summary_Integer
Bio.EUtils.parse.convert_summary_Items
Bio.EUtils.parse.convert_summary_List
Bio.EUtils.parse.convert_summary_String
Bio.EUtils.parse.convert_summary_Unknown
Bio.EUtils.parse.parse_fetch_identifiers
Bio.EUtils.parse.parse_fetch_publication_xml
Bio.EUtils.parse.parse_fetch_sequence_xml
Bio.EUtils.parse.parse_lcheck
Bio.EUtils.parse.parse_link_xml
Bio.EUtils.parse.parse_llinks
Bio.EUtils.parse.parse_neighbor_links
Bio.EUtils.parse.parse_post
Bio.EUtils.parse.parse_search
Bio.EUtils.parse.parse_summary_xml
Bio.EUtils.parse.unescape_entities
Bio.EUtils.sourcegen.genClass
Bio.EUtils.sourcegen.genComment
Bio.EUtils.sourcegen.genFunc
Bio.EUtils.sourcegen.genImport
Bio.EUtils.sourcegen.genMethod
Bio.EUtils.sourcegen.get_generator
Bio.EUtils.sourcegen.get_sourcefile
Bio.EZRetrieve.parse_single
Bio.EZRetrieve.retrieve_single
Bio.Emboss.Primer3.read
Bio.Emboss.PrimerSearch.read
Bio.Entrez.efetch
Bio.Entrez.egquery
Bio.Entrez.einfo
Bio.Entrez.elink
Bio.Entrez.epost
Bio.Entrez.esearch
Bio.Entrez.espell
Bio.Entrez.esummary
Bio.Entrez.query
Bio.Entrez.read
Bio.ExPASy.get_prodoc_entry
Bio.ExPASy.get_prosite_entry
Bio.ExPASy.get_prosite_raw
Bio.ExPASy.get_sprot_raw
Bio.ExPASy.scanprosite1
Bio.ExPASy.sprot_search_de
Bio.ExPASy.sprot_search_ful
Bio.FSSP.FSSPTools.filter
Bio.FSSP.FSSPTools.mult_align
Bio.FSSP.FSSPTools.name_filter
Bio.FSSP.read_fssp
Bio.Fasta.FastaAlign.parse_file
Bio.FilteredReader.dump_saved
Bio.FilteredReader.fix_punctuation
Bio.FilteredReader.has_trailing_linefeed
Bio.FilteredReader.remove_empty_line
Bio.FilteredReader.remove_leading_whitespace
Bio.FilteredReader.remove_useless_dot
Bio.GA.Organism.function_population
Bio.GA.Organism.random_population
Bio.GFF.object2fgroup_sql
Bio.GFF.object_split
Bio.GenBank.LocationParser.parse
Bio.GenBank.LocationParser.scan
Bio.Geo.Record.out_block
Bio.Geo.parse
Bio.HMM.Utilities.pretty_print_prediction
Bio.HotRand.byte_concat
Bio.HotRand.hex_convert
Bio.InterPro.get_interpro_entry
Bio.InterPro.pairlist_to_dict
Bio.KEGG.Compound.id_wrap
Bio.KEGG.Compound.parse
Bio.KEGG.Compound.struct_wrap
Bio.KEGG.Enzyme.id_wrap
Bio.KEGG.Enzyme.parse
Bio.KEGG.Enzyme.struct_wrap
Bio.KEGG.Map.parse
Bio.LogisticRegression.calculate
Bio.LogisticRegression.classify
Bio.LogisticRegression.train
Bio.MarkovModel.find_states
Bio.MarkovModel.itemindex
Bio.MarkovModel.load
Bio.MarkovModel.save
Bio.MarkovModel.train_bw
Bio.MarkovModel.train_visible
Bio.MaxEntropy.calculate
Bio.MaxEntropy.classify
Bio.MaxEntropy.train
Bio.Medline.parse
Bio.Medline.read
Bio.MetaTool.Input.system_to_metatool
Bio.Mindy.BaseDB.read_config
Bio.Mindy.BaseDB.write_config
Bio.Mindy.BerkeleyDB.create
Bio.Mindy.FlatDB.create
Bio.Mindy.FlatDB.open
Bio.Mindy.SimpleSeqRecord.create_berkeleydb
Bio.Mindy.SimpleSeqRecord.create_flatdb
Bio.Mindy.XPath.parse_simple_xpath
Bio.Mindy.XPath.xpath_index
Bio.Mindy.compression.open_file
Bio.Mindy.main
Bio.Mindy.open
Bio.NMR.NOEtools.predictNOE
Bio.NMR.xpktools.data_table
Bio.NMR.xpktools.replace_entry
Bio.NaiveBayes.calculate
Bio.NaiveBayes.classify
Bio.NaiveBayes.train
Bio.NetCatch.is_absolute_url
Bio.NeuralNetwork.BackPropagation.Layer.logistic_function
Bio.NeuralNetwork.Gene.Schema.matches_schema
Bio.Nexus.Nexus.combine
Bio.Nexus.Nexus.get_start_end
Bio.Nexus.Nexus.quotestrip
Bio.Nexus.Nexus.safename
Bio.Nexus.Trees.consensus
Bio.PDB.DSSP'.dssp_dict_from_pdb_file
Bio.PDB.DSSP'.make_dssp_dict
Bio.PDB.DSSP'.ss_to_index
Bio.PDB.Dice.extract
Bio.PDB.NACCESS.process_asa_data
Bio.PDB.NACCESS.process_rsa_data
Bio.PDB.NACCESS.run_naccess
Bio.PDB.PSEA.annotate
Bio.PDB.PSEA.psea
Bio.PDB.PSEA.psea2HEC
Bio.PDB.PSEA.run_psea
Bio.PDB.Polypeptide.index_to_one
Bio.PDB.Polypeptide.index_to_three
Bio.PDB.Polypeptide.is_aa
Bio.PDB.Polypeptide.one_to_index
Bio.PDB.Polypeptide.one_to_three
Bio.PDB.Polypeptide.three_to_index
Bio.PDB.Polypeptide.three_to_one
Bio.PDB.ResidueDepth'.ca_depth
Bio.PDB.ResidueDepth'.get_surface
Bio.PDB.ResidueDepth'.min_dist
Bio.PDB.ResidueDepth'.residue_depth
Bio.PDB.Selection.get_unique_parents
Bio.PDB.Selection.unfold_entities
Bio.PDB.Selection.uniqueify
Bio.PDB.Vector'.calc_angle
Bio.PDB.Vector'.calc_dihedral
Bio.PDB.Vector'.m2rotaxis
Bio.PDB.Vector'.refmat
Bio.PDB.Vector'.rotaxis
Bio.PDB.Vector'.rotmat
Bio.PDB.Vector'.vector_to_axis
Bio.PDB.parse_pdb_header'.parse_pdb_header
Bio.ParserSupport.attempt_read_and_call
Bio.ParserSupport.is_blank_line
Bio.ParserSupport.read_and_call
Bio.ParserSupport.read_and_call_until
Bio.ParserSupport.read_and_call_while
Bio.ParserSupport.safe_peekline
Bio.ParserSupport.safe_readline
Bio.Pathway.Rep.MultiGraph.bf_search
Bio.Pathway.Rep.MultiGraph.df_search
Bio.PopGen.FDist.Utils.approximate_fst
Bio.PopGen.FDist.Utils.convert_genepop_to_fdist
Bio.PopGen.GenePop.parse
Bio.PopGen.SimCoal.Template.dupe
Bio.PopGen.SimCoal.Template.exec_template
Bio.PopGen.SimCoal.Template.generate_island_mat
Bio.PopGen.SimCoal.Template.generate_join_events
Bio.PopGen.SimCoal.Template.generate_model
Bio.PopGen.SimCoal.Template.generate_null_mat
Bio.PopGen.SimCoal.Template.generate_simcoal_from_template
Bio.PopGen.SimCoal.Template.generate_ssm2d_mat
Bio.PopGen.SimCoal.Template.get_chr_template
Bio.PopGen.SimCoal.Template.get_demography_template
Bio.PopGen.SimCoal.Template.get_step_2d
Bio.PopGen.SimCoal.Template.get_xy_from_matrix
Bio.PopGen.SimCoal.Template.no_processor
Bio.PopGen.SimCoal.Template.process_para
Bio.PopGen.SimCoal.Template.process_text
Bio.Prosite.Pattern.compile
Bio.Prosite.Pattern.find_terms
Bio.Prosite.Pattern.pattern_mapping
Bio.Prosite.Pattern.prosite_to_grouped_re
Bio.Prosite.Pattern.prosite_to_re
Bio.Prosite.Pattern.verify_pattern
Bio.Prosite.Prodoc.index_file
Bio.Prosite.Prodoc.parse
Bio.Prosite.Prodoc.read
Bio.Prosite.index_file
Bio.Prosite.parse
Bio.Prosite.read
Bio.Prosite.scan_sequence_expasy
Bio.PubMed.download_many
Bio.PubMed.find_related
Bio.PubMed.search_for
Bio.SCOP.Cla.parse
Bio.SCOP.Des.parse
Bio.SCOP.Dom.parse
Bio.SCOP.Hie.parse
Bio.SCOP.Raf.normalize_letters
Bio.SCOP.Raf.parse
Bio.SCOP.cmp_sccs
Bio.SCOP.parse_domain
Bio.SCOP.search
Bio.Seq.back_transcribe
Bio.Seq.reverse_complement
Bio.Seq.transcribe
Bio.Seq.translate
Bio.SeqIO.AceIO.AceIterator
Bio.SeqIO.FastaIO.FastaIterator
Bio.SeqIO.IgIO.IgIterator
Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator
Bio.SeqIO.InsdcIO.EmblIterator
Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator
Bio.SeqIO.InsdcIO.GenBankIterator
Bio.SeqIO.PhdIO.PhdIterator
Bio.SeqIO.PirIO.PirIterator
Bio.SeqIO.SwissIO.SwissIterator
Bio.SeqIO.TabIO.TabIterator
Bio.SeqIO.parse
Bio.SeqIO.read
Bio.SeqIO.to_alignment
Bio.SeqIO.to_dict
Bio.SeqIO.write
Bio.SeqUtils.CheckSum.crc32
Bio.SeqUtils.CheckSum.crc64
Bio.SeqUtils.CheckSum.gcg
Bio.SeqUtils.CheckSum.seguid
Bio.SeqUtils.GC
Bio.SeqUtils.GC123
Bio.SeqUtils.GC_Frame
Bio.SeqUtils.GC_skew
Bio.SeqUtils.MeltingTemp.Tm_staluc
Bio.SeqUtils.apply_on_multi_fasta
Bio.SeqUtils.fasta_uniqids
Bio.SeqUtils.lcc.lcc_mult
Bio.SeqUtils.lcc.lcc_simp
Bio.SeqUtils.makeTableX
Bio.SeqUtils.molecular_weight
Bio.SeqUtils.nt_search
Bio.SeqUtils.quick_FASTA_reader
Bio.SeqUtils.quicker_apply_on_multi_fasta
Bio.SeqUtils.reverse
Bio.SeqUtils.seq3
Bio.SeqUtils.six_frame_translations
Bio.SeqUtils.translate
Bio.SeqUtils.xGC_skew
Bio.Sequencing.Ace.parse
Bio.Sequencing.Ace.read
Bio.Sequencing.Phd.parse
Bio.Sequencing.Phd.read
Bio.Statistics.lowess.lowess
Bio.Std.alphabet
Bio.Std.application_name
Bio.Std.application_version
Bio.Std.database_name
Bio.Std.database_num_letters
Bio.Std.database_num_sequences
Bio.Std.dbid
Bio.Std.dbxref
Bio.Std.dbxref_dbid
Bio.Std.dbxref_dbname
Bio.Std.dbxref_negate
Bio.Std.description
Bio.Std.description_block
Bio.Std.description_line
Bio.Std.fast_dbxref
Bio.Std.feature
Bio.Std.feature_block
Bio.Std.feature_description
Bio.Std.feature_location
Bio.Std.feature_location_end
Bio.Std.feature_location_start
Bio.Std.feature_name
Bio.Std.feature_qualifier
Bio.Std.feature_qualifier_description
Bio.Std.feature_qualifier_name
Bio.Std.hit
Bio.Std.hit_description
Bio.Std.hit_length
Bio.Std.hsp
Bio.Std.hsp_frame
Bio.Std.hsp_seqalign
Bio.Std.hsp_seqalign_homology_seq
Bio.Std.hsp_seqalign_query_end
Bio.Std.hsp_seqalign_query_leader
Bio.Std.hsp_seqalign_query_name
Bio.Std.hsp_seqalign_query_seq
Bio.Std.hsp_seqalign_query_start
Bio.Std.hsp_seqalign_subject_end
Bio.Std.hsp_seqalign_subject_name
Bio.Std.hsp_seqalign_subject_seq
Bio.Std.hsp_seqalign_subject_start
Bio.Std.hsp_strand
Bio.Std.hsp_value
Bio.Std.query_description
Bio.Std.query_description_block
Bio.Std.query_size
Bio.Std.record
Bio.Std.search_header
Bio.Std.search_parameter
Bio.Std.search_statistic
Bio.Std.search_table
Bio.Std.search_table_description
Bio.Std.search_table_entry
Bio.Std.search_table_value
Bio.Std.sequence
Bio.Std.sequence_block
Bio.StdHandler.add_first_text_handler
Bio.StdHandler.add_int_handler
Bio.StdHandler.add_text_block_handler
Bio.StdHandler.add_text_decode_handler
Bio.StdHandler.add_text_dict_handler
Bio.StdHandler.add_text_handler
Bio.StdHandler.add_value_handler
Bio.SubsMat.FreqTable.read_count
Bio.SubsMat.FreqTable.read_freq
Bio.SubsMat.make_log_odds_matrix
Bio.SubsMat.observed_frequency_to_substitution_matrix
Bio.SubsMat.read_text_matrix
Bio.SubsMat.two_mat_DJS
Bio.SubsMat.two_mat_relative_entropy
Bio.SwissProt.KeyWList.extract_keywords
Bio.SwissProt.KeyWList.parse
Bio.SwissProt.SProt.index_file
Bio.SwissProt.parse
Bio.SwissProt.read
Bio.Wise.align
Bio.Wise.all_pairs
Bio.Wise.dnal.align
Bio.Wise.dnal.main
Bio.Wise.main
Bio.Wise.psw.align
Bio.Wise.psw.main
Bio.Wise.psw.parse
Bio.Wise.psw.parse_line
Bio.distance.euclidean
Bio.distance.euclidean_py
Bio.kNN.calculate
Bio.kNN.classify
Bio.kNN.equal_weight
Bio.kNN.train
Bio.listfns.asdict
Bio.listfns.contents
Bio.listfns.count
Bio.listfns.difference
Bio.listfns.indexesof
Bio.listfns.intersection
Bio.listfns.itemindex
Bio.listfns.items
Bio.listfns.take
Bio.listfns.take_byfn
Bio.mathfns.fcmp
Bio.mathfns.intd
Bio.mathfns.safe_exp
Bio.mathfns.safe_log
Bio.mathfns.safe_log2
Bio.pairwise2.calc_affine_penalty
Bio.pairwise2.format_alignment
Bio.pairwise2.print_matrix
Bio.pairwise2.rint
Bio.stringfns.find_anychar
Bio.stringfns.rfind_anychar
Bio.stringfns.splitany
Bio.triefind.find
Bio.triefind.find_words
Bio.triefind.match
Bio.triefind.match_all
Bio.utils.back_transcribe
Bio.utils.back_translate
Bio.utils.count_monomers
Bio.utils.percent_monomers
Bio.utils.reduce_sequence
Bio.utils.sum
Bio.utils.sum_2ple
Bio.utils.total_weight
Bio.utils.total_weight_range
Bio.utils.transcribe
Bio.utils.translate
Bio.utils.translate_to_stop
Bio.utils.ungap
Bio.utils.verify_alphabet
BioSQL.BioSeqDatabase.open_database
BioSQL.DBUtils.get_dbutils
Martel.Alt
Martel.Any
Martel.AnyBut
Martel.Assert
Martel.AssertNot
Martel.Bol
Martel.Case
Martel.DelimitedFields
Martel.Digits
Martel.Dispatch.escape
Martel.Dispatch.superdir
Martel.Dispatch.unescape
Martel.Empty
Martel.Eof
Martel.Eol
Martel.Float
Martel.Generate.check_assert
Martel.Generate.check_assert_not
Martel.Generate.check_at_beginning
Martel.Generate.generate
Martel.Generate.generate_alt
Martel.Generate.generate_any
Martel.Generate.generate_assert
Martel.Generate.generate_at_beginning
Martel.Generate.generate_at_end
Martel.Generate.generate_debug
Martel.Generate.generate_dot
Martel.Generate.generate_eol
Martel.Generate.generate_group
Martel.Generate.generate_groupref
Martel.Generate.generate_literal
Martel.Generate.generate_max_repeat
Martel.Generate.generate_named_max_repeat
Martel.Generate.generate_null_op
Martel.Generate.generate_parser
Martel.Generate.generate_pass_through
Martel.Generate.generate_seq
Martel.Generate.generate_str
Martel.Generate.track_position
Martel.Group
Martel.Integer
Martel.MaxRepeat
Martel.Opt
Martel.Punctuation
Martel.Re
Martel.Rep
Martel.Rep1
Martel.RepN
Martel.Seq
Martel.SimpleRecordFilter
Martel.SkipLinesTo
Martel.SkipLinesUntil
Martel.Spaces
Martel.Str
Martel.Str1
Martel.Time.make_expression
Martel.Time.make_pattern
Martel.ToEol
Martel.ToSep
Martel.Unprintable
Martel.UntilEol
Martel.UntilSep
Martel.Word
Martel.msre_constants.makedict
Martel.msre_parse.expand_template
Martel.msre_parse.is_char
Martel.msre_parse.is_firstchar
Martel.msre_parse.isname
Martel.msre_parse.isname_with_attrs
Martel.msre_parse.parse
Martel.msre_parse.parse_template
Martel.optimize.get_merge_text
Martel.optimize.is_mergeable
Martel.optimize.merge_strings
Martel.optimize.optimize
Martel.optimize.optimize_unnamed_groups
Martel.optimize.optimize_unnamed_groups_recursive
Martel.optimize.skip_empty_group
Martel.replace_groups
Martel.select_names
Martel.setup.check_install
Martel.setup.check_mxTextTools
Martel.test.run_tests.local_test_main
Martel.test.run_tests.main
Martel.test.support.test_file
Martel.test.support.test_string
Martel.test.support.time_file
Martel.test.test
Martel.test.test_Expression.compare
Martel.test.test_Expression.test
Martel.test.test_Expression.test__add__
Martel.test.test_Expression.test__or__
Martel.test.test_Expression.test_alt
Martel.test.test_Expression.test_any
Martel.test.test_Expression.test_assert
Martel.test.test_Expression.test_at_beginning
Martel.test.test_Expression.test_at_end
Martel.test.test_Expression.test_dot
Martel.test.test_Expression.test_group
Martel.test.test_Expression.test_group_names
Martel.test.test_Expression.test_groupref
Martel.test.test_Expression.test_literal
Martel.test.test_Expression.test_max_repeat
Martel.test.test_Expression.test_minimize
Martel.test.test_Expression.test_nocase
Martel.test.test_Expression.test_nodes
Martel.test.test_Expression.test_null_op
Martel.test.test_Expression.test_seq
Martel.test.test_Expression.test_str
Martel.test.test_Expression.test_valid_names
Martel.test.test_Generate.test
Martel.test.test_IterParser.gen_iterator
Martel.test.test_IterParser.test
Martel.test.test_IterParser.test_hf1
Martel.test.test_IterParser.test_hf2
Martel.test.test_IterParser.test_hf3
Martel.test.test_IterParser.test_hf4
Martel.test.test_IterParser.test_hf5
Martel.test.test_IterParser.test_hf6
Martel.test.test_IterParser.test_hf7
Martel.test.test_IterParser.test_hf8
Martel.test.test_IterParser.test_make_iterparsers1
Martel.test.test_IterParser.test_make_iterparsers2
Martel.test.test_IterParser.test_missing_end1
Martel.test.test_IterParser.test_missing_end2
Martel.test.test_IterParser.test_missing_end3
Martel.test.test_IterParser.test_ri1
Martel.test.test_IterParser.test_ri2
Martel.test.test_IterParser.test_ri3
Martel.test.test_Iterator.test
Martel.test.test_Iterator.test1
Martel.test.test_Iterator.test2
Martel.test.test_Iterator.test3
Martel.test.test_Iterator.test4
Martel.test.test_Iterator.test5
Martel.test.test_Iterator.test_header_footer1
Martel.test.test_Iterator.test_header_footer2
Martel.test.test_Iterator.test_header_footer3
Martel.test.test_Iterator.test_header_footer4
Martel.test.test_Iterator.test_header_footer5
Martel.test.test_Iterator.test_header_footer6
Martel.test.test_Iterator.test_header_footer7
Martel.test.test_LAX.test
Martel.test.test_LAX.test1
Martel.test.test_LAX.test_filter
Martel.test.test_ParseRecords.test
Martel.test.test_Parser.test
Martel.test.test_Parser.test_header_footer1
Martel.test.test_Parser.test_header_footer2
Martel.test.test_Parser.test_header_footer3
Martel.test.test_Parser.test_header_footer4
Martel.test.test_Parser.test_header_footer5
Martel.test.test_Parser.test_header_footer6
Martel.test.test_Parser.test_header_footer7
Martel.test.test_Parser.test_header_footer8
Martel.test.test_Parser.test_reader_parser
Martel.test.test_Parser.test_record_parser
Martel.test.test_RecordReader.test
Martel.test.test_RecordReader.test_count
Martel.test.test_RecordReader.test_count_lines
Martel.test.test_RecordReader.test_count_lines_lines
Martel.test.test_RecordReader.test_end
Martel.test.test_RecordReader.test_end_lines
Martel.test.test_RecordReader.test_everything
Martel.test.test_RecordReader.test_everything_lines
Martel.test.test_RecordReader.test_fasta
Martel.test.test_RecordReader.test_nothing
Martel.test.test_RecordReader.test_nothing_lines
Martel.test.test_RecordReader.test_start
Martel.test.test_RecordReader.test_start_lines
Martel.test.test_RecordReader.test_until
Martel.test.test_RecordReader.test_until_lines
Martel.test.test_RecordReader2.count_records
Martel.test.test_RecordReader2.normalize
Martel.test.test_RecordReader2.test
Martel.test.test_RecordReader2.test_count_lines
Martel.test.test_RecordReader2.test_endswith
Martel.test.test_RecordReader2.test_endswith_SP
Martel.test.test_RecordReader2.test_endswith_errors
Martel.test.test_RecordReader2.test_endswith_exhaustive
Martel.test.test_RecordReader2.test_endswith_generic
Martel.test.test_RecordReader2.test_endswith_remainder
Martel.test.test_RecordReader2.test_everything
Martel.test.test_RecordReader2.test_nothing
Martel.test.test_RecordReader2.test_startswith
Martel.test.test_RecordReader2.test_startswith_SP
Martel.test.test_RecordReader2.test_startswith_errors
Martel.test.test_RecordReader2.test_startswith_exhaustive
Martel.test.test_RecordReader2.test_startswith_generic
Martel.test.test_RecordReader2.test_startswith_remainder
Martel.test.test_RecordReader2.test_until
Martel.test.test_Time.test
Martel.test.test_Time.test_docstring
Martel.test.test_Time.test_expand
Martel.test.test_Time.test_syntax
Martel.test.test_Time.test_terms
Martel.test.test_Time.test_times
Martel.test.test_attrs.check_dicts
Martel.test.test_attrs.check_element
Martel.test.test_attrs.cmp_dicts
Martel.test.test_attrs.get_element
Martel.test.test_attrs.test
Martel.test.test_attrs.test_escape
Martel.test.test_attrs.test_header_footer_parser
Martel.test.test_attrs.test_multi
Martel.test.test_attrs.test_none
Martel.test.test_attrs.test_record_parser
Martel.test.test_attrs.test_same_tag
Martel.test.test_attrs.test_single
Martel.test.test_convert_re.test
Martel.test.test_delimiter.do_test
Martel.test.test_delimiter.test
Martel.test.test_macros.has_group
Martel.test.test_macros.has_no_group
Martel.test.test_macros.must_not_parse
Martel.test.test_macros.must_parse
Martel.test.test_macros.test
Martel.test.test_macros.test_DelimitedFields
Martel.test.test_macros.test_Digits
Martel.test.test_macros.test_Float
Martel.test.test_macros.test_Punctuation
Martel.test.test_macros.test_Spaces
Martel.test.test_macros.test_ToEol
Martel.test.test_macros.test_ToSep
Martel.test.test_macros.test_Unprintable
Martel.test.test_macros.test_Word
Martel.test.test_optimize.check_error_pos
Martel.test.test_optimize.test
Martel.test.test_optimize.test1
Martel.test.test_optimize.test10
Martel.test.test_optimize.test11
Martel.test.test_optimize.test12
Martel.test.test_optimize.test13
Martel.test.test_optimize.test14
Martel.test.test_optimize.test15
Martel.test.test_optimize.test16
Martel.test.test_optimize.test17
Martel.test.test_optimize.test18
Martel.test.test_optimize.test19
Martel.test.test_optimize.test2
Martel.test.test_optimize.test20
Martel.test.test_optimize.test3
Martel.test.test_optimize.test4
Martel.test.test_optimize.test5
Martel.test.test_optimize.test6
Martel.test.test_optimize.test7
Martel.test.test_optimize.test8
Martel.test.test_optimize.test9
Martel.test.test_swissprot38.dump
Martel.test.test_swissprot38.test
Martel.test.testformats.delimiter.delimiter
Martel.test.testformats.swissprot38.Simple
All Variables
Bio.Affy.CelFile.ALLOW_THREADS
Bio.Affy.CelFile.BUFSIZE
Bio.Affy.CelFile.CLIP
Bio.Affy.CelFile.ERR_CALL
Bio.Affy.CelFile.ERR_DEFAULT
Bio.Affy.CelFile.ERR_DEFAULT2
Bio.Affy.CelFile.ERR_IGNORE
Bio.Affy.CelFile.ERR_LOG
Bio.Affy.CelFile.ERR_PRINT
Bio.Affy.CelFile.ERR_RAISE
Bio.Affy.CelFile.ERR_WARN
Bio.Affy.CelFile.FLOATING_POINT_SUPPORT
Bio.Affy.CelFile.FPE_DIVIDEBYZERO
Bio.Affy.CelFile.FPE_INVALID
Bio.Affy.CelFile.FPE_OVERFLOW
Bio.Affy.CelFile.FPE_UNDERFLOW
Bio.Affy.CelFile.False_
Bio.Affy.CelFile.Inf
Bio.Affy.CelFile.Infinity
Bio.Affy.CelFile.MAXDIMS
Bio.Affy.CelFile.NAN
Bio.Affy.CelFile.NINF
Bio.Affy.CelFile.NZERO
Bio.Affy.CelFile.NaN
Bio.Affy.CelFile.PINF
Bio.Affy.CelFile.PZERO
Bio.Affy.CelFile.RAISE
Bio.Affy.CelFile.SHIFT_DIVIDEBYZERO
Bio.Affy.CelFile.SHIFT_INVALID
Bio.Affy.CelFile.SHIFT_OVERFLOW
Bio.Affy.CelFile.SHIFT_UNDERFLOW
Bio.Affy.CelFile.ScalarType
Bio.Affy.CelFile.True_
Bio.Affy.CelFile.UFUNC_BUFSIZE_DEFAULT
Bio.Affy.CelFile.UFUNC_PYVALS_NAME
Bio.Affy.CelFile.WRAP
Bio.Affy.CelFile.__package__
Bio.Affy.CelFile.absolute
Bio.Affy.CelFile.add
Bio.Affy.CelFile.arccos
Bio.Affy.CelFile.arccosh
Bio.Affy.CelFile.arcsin
Bio.Affy.CelFile.arcsinh
Bio.Affy.CelFile.arctan
Bio.Affy.CelFile.arctan2
Bio.Affy.CelFile.arctanh
Bio.Affy.CelFile.bitwise_and
Bio.Affy.CelFile.bitwise_not
Bio.Affy.CelFile.bitwise_or
Bio.Affy.CelFile.bitwise_xor
Bio.Affy.CelFile.c_
Bio.Affy.CelFile.cast
Bio.Affy.CelFile.ceil
Bio.Affy.CelFile.conj
Bio.Affy.CelFile.conjugate
Bio.Affy.CelFile.cos
Bio.Affy.CelFile.cosh
Bio.Affy.CelFile.degrees
Bio.Affy.CelFile.divide
Bio.Affy.CelFile.e
Bio.Affy.CelFile.equal
Bio.Affy.CelFile.exp
Bio.Affy.CelFile.expm1
Bio.Affy.CelFile.fabs
Bio.Affy.CelFile.floor
Bio.Affy.CelFile.floor_divide
Bio.Affy.CelFile.fmod
Bio.Affy.CelFile.frexp
Bio.Affy.CelFile.greater
Bio.Affy.CelFile.greater_equal
Bio.Affy.CelFile.hypot
Bio.Affy.CelFile.index_exp
Bio.Affy.CelFile.inf
Bio.Affy.CelFile.infty
Bio.Affy.CelFile.invert
Bio.Affy.CelFile.isfinite
Bio.Affy.CelFile.isinf
Bio.Affy.CelFile.isnan
Bio.Affy.CelFile.ldexp
Bio.Affy.CelFile.left_shift
Bio.Affy.CelFile.less
Bio.Affy.CelFile.less_equal
Bio.Affy.CelFile.little_endian
Bio.Affy.CelFile.log
Bio.Affy.CelFile.log10
Bio.Affy.CelFile.log1p
Bio.Affy.CelFile.logical_and
Bio.Affy.CelFile.logical_not
Bio.Affy.CelFile.logical_or
Bio.Affy.CelFile.logical_xor
Bio.Affy.CelFile.maximum
Bio.Affy.CelFile.mgrid
Bio.Affy.CelFile.minimum
Bio.Affy.CelFile.mod
Bio.Affy.CelFile.modf
Bio.Affy.CelFile.multiply
Bio.Affy.CelFile.nan
Bio.Affy.CelFile.nbytes
Bio.Affy.CelFile.negative
Bio.Affy.CelFile.newaxis
Bio.Affy.CelFile.not_equal
Bio.Affy.CelFile.ogrid
Bio.Affy.CelFile.ones_like
Bio.Affy.CelFile.pi
Bio.Affy.CelFile.power
Bio.Affy.CelFile.r_
Bio.Affy.CelFile.radians
Bio.Affy.CelFile.reciprocal
Bio.Affy.CelFile.remainder
Bio.Affy.CelFile.right_shift
Bio.Affy.CelFile.rint
Bio.Affy.CelFile.s_
Bio.Affy.CelFile.sctypeDict
Bio.Affy.CelFile.sctypeNA
Bio.Affy.CelFile.sctypes
Bio.Affy.CelFile.sign
Bio.Affy.CelFile.signbit
Bio.Affy.CelFile.sin
Bio.Affy.CelFile.sinh
Bio.Affy.CelFile.sqrt
Bio.Affy.CelFile.square
Bio.Affy.CelFile.subtract
Bio.Affy.CelFile.tan
Bio.Affy.CelFile.tanh
Bio.Affy.CelFile.true_divide
Bio.Affy.CelFile.typeDict
Bio.Affy.CelFile.typeNA
Bio.Affy.CelFile.typecodes
Bio.Affy.__package__
Bio.Align.AlignInfo.Nucleotide4Random
Bio.Align.AlignInfo.Protein20Random
Bio.Align.AlignInfo.__package__
Bio.Align.FormatConvert.__package__
Bio.Align.Generic.__package__
Bio.Align.__package__
Bio.AlignAce.AlignAceStandalone.StringTypes
Bio.AlignAce.AlignAceStandalone.__package__
Bio.AlignAce.AlignAceStandalone.xml_support
Bio.AlignAce.Applications.__package__
Bio.AlignAce.CompareAceStandalone.__package__
Bio.AlignAce.Motif.__package__
Bio.AlignAce.Parser.StringTypes
Bio.AlignAce.Parser.__package__
Bio.AlignAce.Parser.xml_support
Bio.AlignAce.Scanner.__package__
Bio.AlignAce.__package__
Bio.AlignIO.ClustalIO.__package__
Bio.AlignIO.EmbossIO.__package__
Bio.AlignIO.FastaIO.__package__
Bio.AlignIO.Interfaces.__package__
Bio.AlignIO.NexusIO.__package__
Bio.AlignIO.PhylipIO.__package__
Bio.AlignIO.StockholmIO.__package__
Bio.AlignIO.__package__
Bio.Alphabet.IUPAC.__package__
Bio.Alphabet.IUPAC.ambiguous_dna
Bio.Alphabet.IUPAC.ambiguous_rna
Bio.Alphabet.IUPAC.extended_dna
Bio.Alphabet.IUPAC.extended_protein
Bio.Alphabet.IUPAC.protein
Bio.Alphabet.IUPAC.unambiguous_dna
Bio.Alphabet.IUPAC.unambiguous_rna
Bio.Alphabet.Reduced.__package__
Bio.Alphabet.Reduced.hp_model
Bio.Alphabet.Reduced.hp_model_tab
Bio.Alphabet.Reduced.murphy_10
Bio.Alphabet.Reduced.murphy_10_tab
Bio.Alphabet.Reduced.murphy_15
Bio.Alphabet.Reduced.murphy_15_tab
Bio.Alphabet.Reduced.murphy_4
Bio.Alphabet.Reduced.murphy_4_tab
Bio.Alphabet.Reduced.murphy_8
Bio.Alphabet.Reduced.murphy_8_tab
Bio.Alphabet.Reduced.pc_5_table
Bio.Alphabet.__package__
Bio.Alphabet.generic_alphabet
Bio.Alphabet.generic_dna
Bio.Alphabet.generic_nucleotide
Bio.Alphabet.generic_protein
Bio.Alphabet.generic_rna
Bio.Alphabet.single_letter_alphabet
Bio.Application.__package__
Bio.Blast.Applications.__package__
Bio.Blast.NCBIStandalone.StringTypes
Bio.Blast.NCBIStandalone.__package__
Bio.Blast.NCBIStandalone.xml_support
Bio.Blast.NCBIWWW.StringTypes
Bio.Blast.NCBIWWW.__package__
Bio.Blast.NCBIWWW.xml_support
Bio.Blast.NCBIXML.__package__
Bio.Blast.ParseBlastTable.__package__
Bio.Blast.ParseBlastTable.reader_keywords
Bio.Blast.Record.__package__
Bio.Blast.__package__
Bio.CAPS.__package__
Bio.Clustalw.__package__
Bio.Compass.StringTypes
Bio.Compass.__package__
Bio.Compass.xml_support
Bio.Crystal.__package__
Bio.DBXRef.__package__
Bio.DBXRef.__warningregistry__
Bio.DBXRef.dbname_conversions
Bio.Data.CodonTable.__package__
Bio.Data.CodonTable.ambiguous_dna_by_id
Bio.Data.CodonTable.ambiguous_dna_by_name
Bio.Data.CodonTable.ambiguous_generic_by_id
Bio.Data.CodonTable.ambiguous_generic_by_name
Bio.Data.CodonTable.ambiguous_rna_by_id
Bio.Data.CodonTable.ambiguous_rna_by_name
Bio.Data.CodonTable.generic_by_id
Bio.Data.CodonTable.generic_by_name
Bio.Data.CodonTable.standard_dna_table
Bio.Data.CodonTable.standard_rna_table
Bio.Data.CodonTable.unambiguous_dna_by_id
Bio.Data.CodonTable.unambiguous_dna_by_name
Bio.Data.CodonTable.unambiguous_rna_by_id
Bio.Data.CodonTable.unambiguous_rna_by_name
Bio.Data.IUPACData.__package__
Bio.Data.IUPACData.ambiguous_dna_complement
Bio.Data.IUPACData.ambiguous_dna_letters
Bio.Data.IUPACData.ambiguous_dna_values
Bio.Data.IUPACData.ambiguous_dna_weight_ranges
Bio.Data.IUPACData.ambiguous_rna_complement
Bio.Data.IUPACData.ambiguous_rna_letters
Bio.Data.IUPACData.ambiguous_rna_values
Bio.Data.IUPACData.ambiguous_rna_weight_ranges
Bio.Data.IUPACData.avg_ambiguous_dna_weights
Bio.Data.IUPACData.avg_ambiguous_rna_weights
Bio.Data.IUPACData.avg_extended_protein_weights
Bio.Data.IUPACData.extended_dna_letters
Bio.Data.IUPACData.extended_protein_letters
Bio.Data.IUPACData.extended_protein_values
Bio.Data.IUPACData.extended_protein_weight_ranges
Bio.Data.IUPACData.protein_letters
Bio.Data.IUPACData.protein_weight_ranges
Bio.Data.IUPACData.protein_weights
Bio.Data.IUPACData.unambiguous_dna_letters
Bio.Data.IUPACData.unambiguous_dna_weight_ranges
Bio.Data.IUPACData.unambiguous_dna_weights
Bio.Data.IUPACData.unambiguous_rna_letters
Bio.Data.IUPACData.unambiguous_rna_weight_ranges
Bio.Data.IUPACData.unambiguous_rna_weights
Bio.Data.__package__
Bio.Decode.__package__
Bio.Decode.__warningregistry__
Bio.Decode.decode_functions
Bio.DocSQL.connection
Bio.EUtils.Config.PUBLICATION_TYPE
Bio.EUtils.Config.SEQUENCE_TYPE
Bio.EUtils.Config.__package__
Bio.EUtils.Config.databases
Bio.EUtils.DBIdsClient.__package__
Bio.EUtils.DTDs.LinkOut.__package__
Bio.EUtils.DTDs.__package__
Bio.EUtils.DTDs.eInfo_020511.__package__
Bio.EUtils.DTDs.eLink_020511.__package__
Bio.EUtils.DTDs.ePost_020511.__package__
Bio.EUtils.DTDs.eSearch_020511.__package__
Bio.EUtils.DTDs.eSummary_020511.__package__
Bio.EUtils.Datatypes.__package__
Bio.EUtils.Datatypes.problem_category_mapping
Bio.EUtils.HistoryClient.__package__
Bio.EUtils.MINUS_STRAND
Bio.EUtils.Mixins.__package__
Bio.EUtils.MultiDict.__package__
Bio.EUtils.MultiDict.__test__
Bio.EUtils.PLUS_STRAND
Bio.EUtils.POM.ANY
Bio.EUtils.POM.AT_CDATA
Bio.EUtils.POM.AT_ENTITIES
Bio.EUtils.POM.AT_ENTITY
Bio.EUtils.POM.AT_ID
Bio.EUtils.POM.AT_IDREF
Bio.EUtils.POM.AT_IDREFS
Bio.EUtils.POM.AT_NMTOKEN
Bio.EUtils.POM.AT_NMTOKENS
Bio.EUtils.POM.DEFAULT
Bio.EUtils.POM.EMPTY
Bio.EUtils.POM.FIXED
Bio.EUtils.POM.False
Bio.EUtils.POM.IMPLIED
Bio.EUtils.POM.REQUIRED
Bio.EUtils.POM.True
Bio.EUtils.POM.__package__
Bio.EUtils.ReseekFile.__package__
Bio.EUtils.ThinClient.DUMP_RESULT
Bio.EUtils.ThinClient.DUMP_URL
Bio.EUtils.ThinClient.EMAIL
Bio.EUtils.ThinClient.TOOL
Bio.EUtils.ThinClient.__package__
Bio.EUtils.__package__
Bio.EUtils.__warningregistry__
Bio.EUtils.dtd2py.__package__
Bio.EUtils.parse.__package__
Bio.EUtils.parse.entitydefs
Bio.EUtils.parse.summary_type_parser_table
Bio.EUtils.setup.__package__
Bio.EUtils.setup.d
Bio.EUtils.sourcegen.BANGLINE
Bio.EUtils.sourcegen.__package__
Bio.EZRetrieve.__package__
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Bio.SubsMat.MatrixInfo.ident
Bio.SubsMat.MatrixInfo.johnson
Bio.SubsMat.MatrixInfo.levin
Bio.SubsMat.MatrixInfo.mclach
Bio.SubsMat.MatrixInfo.miyata
Bio.SubsMat.MatrixInfo.nwsgappep
Bio.SubsMat.MatrixInfo.pam120
Bio.SubsMat.MatrixInfo.pam180
Bio.SubsMat.MatrixInfo.pam250
Bio.SubsMat.MatrixInfo.pam30
Bio.SubsMat.MatrixInfo.pam300
Bio.SubsMat.MatrixInfo.pam60
Bio.SubsMat.MatrixInfo.pam90
Bio.SubsMat.MatrixInfo.rao
Bio.SubsMat.MatrixInfo.risler
Bio.SubsMat.MatrixInfo.structure
Bio.SubsMat.NOTYPE
Bio.SubsMat.OBSFREQ
Bio.SubsMat.SUBS
Bio.SubsMat.__package__
Bio.SubsMat.diagALL
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Bio.SwissProt.KeyWList.xml_support
Bio.SwissProt.SProt.__package__
Bio.SwissProt.SProt.xml_support
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Bio.Transcribe.__package__
Bio.Transcribe.ambiguous_transcriber
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Bio.Transcribe.unambiguous_transcriber
Bio.Translate.__package__
Bio.Translate.ambiguous_dna_by_id
Bio.Translate.ambiguous_dna_by_name
Bio.Translate.ambiguous_rna_by_id
Bio.Translate.ambiguous_rna_by_name
Bio.Translate.key
Bio.Translate.unambiguous_dna_by_id
Bio.Translate.unambiguous_dna_by_name
Bio.Translate.unambiguous_rna_by_id
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Bio.UniGene.StringTypes
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Bio.distance.FPE_DIVIDEBYZERO
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Bio.distance.MAXDIMS
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Bio.distance.SHIFT_OVERFLOW
Bio.distance.SHIFT_UNDERFLOW
Bio.distance.ScalarType
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Bio.distance.WRAP
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Bio.distance.__warningregistry__
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Bio.distance.arctanh
Bio.distance.bitwise_and
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Bio.distance.c_
Bio.distance.cast
Bio.distance.ceil
Bio.distance.conj
Bio.distance.conjugate
Bio.distance.cos
Bio.distance.cosh
Bio.distance.degrees
Bio.distance.divide
Bio.distance.e
Bio.distance.equal
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Bio.distance.expm1
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Bio.distance.greater
Bio.distance.greater_equal
Bio.distance.hypot
Bio.distance.index_exp
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Bio.distance.invert
Bio.distance.isfinite
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Bio.distance.ldexp
Bio.distance.left_shift
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Bio.distance.little_endian
Bio.distance.log
Bio.distance.log10
Bio.distance.log1p
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Bio.distance.maximum
Bio.distance.mgrid
Bio.distance.minimum
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Bio.distance.multiply
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Bio.distance.nbytes
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Bio.distance.ones_like
Bio.distance.pi
Bio.distance.power
Bio.distance.r_
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Bio.distance.reciprocal
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Bio.distance.sctypeDict
Bio.distance.sctypeNA
Bio.distance.sctypes
Bio.distance.sign
Bio.distance.signbit
Bio.distance.sin
Bio.distance.sinh
Bio.distance.sqrt
Bio.distance.square
Bio.distance.subtract
Bio.distance.tan
Bio.distance.tanh
Bio.distance.true_divide
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Bio.listfns.__package__
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Bio.writers.SeqRecord.__package__
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Martel.Expression.MAXREPEAT
Martel.Generate.generate_table
Martel.Generate.supports_lookahead
Martel.RecordReader.SIZEHINT
Martel.convert_re.categories
Martel.convert_re.converter_table
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Martel.msre_constants.ASSERT
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Martel.msre_constants.AT
Martel.msre_constants.ATCODES
Martel.msre_constants.AT_BEGINNING
Martel.msre_constants.AT_BEGINNING_LINE
Martel.msre_constants.AT_BEGINNING_STRING
Martel.msre_constants.AT_BOUNDARY
Martel.msre_constants.AT_END
Martel.msre_constants.AT_END_LINE
Martel.msre_constants.AT_END_STRING
Martel.msre_constants.AT_LOCALE
Martel.msre_constants.AT_LOC_BOUNDARY
Martel.msre_constants.AT_LOC_NON_BOUNDARY
Martel.msre_constants.AT_MULTILINE
Martel.msre_constants.AT_NON_BOUNDARY
Martel.msre_constants.AT_UNICODE
Martel.msre_constants.AT_UNI_BOUNDARY
Martel.msre_constants.AT_UNI_NON_BOUNDARY
Martel.msre_constants.BRANCH
Martel.msre_constants.CALL
Martel.msre_constants.CATEGORY
Martel.msre_constants.CATEGORY_DIGIT
Martel.msre_constants.CATEGORY_LINEBREAK
Martel.msre_constants.CATEGORY_LOC_NOT_WORD
Martel.msre_constants.CATEGORY_LOC_WORD
Martel.msre_constants.CATEGORY_NEWLINE
Martel.msre_constants.CATEGORY_NOT_DIGIT
Martel.msre_constants.CATEGORY_NOT_LINEBREAK
Martel.msre_constants.CATEGORY_NOT_SPACE
Martel.msre_constants.CATEGORY_NOT_WORD
Martel.msre_constants.CATEGORY_SPACE
Martel.msre_constants.CATEGORY_UNI_DIGIT
Martel.msre_constants.CATEGORY_UNI_LINEBREAK
Martel.msre_constants.CATEGORY_UNI_NOT_DIGIT
Martel.msre_constants.CATEGORY_UNI_NOT_LINEBREAK
Martel.msre_constants.CATEGORY_UNI_NOT_SPACE
Martel.msre_constants.CATEGORY_UNI_NOT_WORD
Martel.msre_constants.CATEGORY_UNI_SPACE
Martel.msre_constants.CATEGORY_UNI_WORD
Martel.msre_constants.CATEGORY_WORD
Martel.msre_constants.CHARSET
Martel.msre_constants.CHCODES
Martel.msre_constants.CH_LOCALE
Martel.msre_constants.CH_UNICODE
Martel.msre_constants.FAILURE
Martel.msre_constants.GROUPREF
Martel.msre_constants.GROUPREF_IGNORE
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Martel.msre_constants.INFO
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Martel.msre_constants.JUMP
Martel.msre_constants.LITERAL
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Martel.msre_constants.MAX_REPEAT
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Martel.msre_constants.OPCODES
Martel.msre_constants.OP_IGNORE
Martel.msre_constants.RANGE
Martel.msre_constants.REPEAT
Martel.msre_constants.REPEAT_ONE
Martel.msre_constants.SRE_FLAG_DEBUG
Martel.msre_constants.SRE_FLAG_DOTALL
Martel.msre_constants.SRE_FLAG_IGNORECASE
Martel.msre_constants.SRE_FLAG_LOCALE
Martel.msre_constants.SRE_FLAG_MULTILINE
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Martel.msre_constants.SRE_FLAG_UNICODE
Martel.msre_constants.SRE_FLAG_VERBOSE
Martel.msre_constants.SRE_INFO_CHARSET
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Martel.msre_constants.SUBPATTERN
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Martel.msre_parse.CATEGORIES
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Martel.msre_parse.FLAGS
Martel.msre_parse.HEXDIGITS
Martel.msre_parse.OCTDIGITS
Martel.msre_parse.REPEAT_CHARS
Martel.msre_parse.SPECIAL_CHARS
Martel.msre_parse.WHITESPACE
Martel.msre_parse.atoi
Martel.test.test_Iterator.text
Martel.test.test_ParseRecords.text
Martel.test.test_RecordReader.sp_sample
Martel.test.test_RecordReader2.data1
Martel.test.test_delimiter.expected_records
Martel.test.test_delimiter.sample_dir
Martel.test.test_swissprot38.add_test
Martel.test.test_swissprot38.add_test_lines
Martel.test.test_swissprot38.copyright
Martel.test.test_swissprot38.record1
Martel.test.test_swissprot38.record2
Martel.test.test_swissprot38.s
Martel.test.test_swissprot38.s1
Martel.test.test_swissprot38.s2
Martel.test.test_swissprot38.s3
Martel.test.test_swissprot38.test_list
Martel.test.testformats.delimiter.colonformat
Martel.test.testformats.delimiter.commaformat
Martel.test.testformats.delimiter.spaceformat
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Martel.test.testformats.swissprot38.CC_copyright
Martel.test.testformats.swissprot38.CC_copyright_begin
Martel.test.testformats.swissprot38.CC_copyright_end
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Martel.test.testformats.swissprot38.DE_block
Martel.test.testformats.swissprot38.DR
Martel.test.testformats.swissprot38.DR_block
Martel.test.testformats.swissprot38.DR_embl
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Martel.test.testformats.swissprot38.DR_prosite
Martel.test.testformats.swissprot38.DT_ann_update
Martel.test.testformats.swissprot38.DT_created
Martel.test.testformats.swissprot38.DT_seq_update
Martel.test.testformats.swissprot38.FT
Martel.test.testformats.swissprot38.FT_continuation
Martel.test.testformats.swissprot38.FT_range
Martel.test.testformats.swissprot38.GN
Martel.test.testformats.swissprot38.GN_block
Martel.test.testformats.swissprot38.ID
Martel.test.testformats.swissprot38.KW
Martel.test.testformats.swissprot38.KW_block
Martel.test.testformats.swissprot38.OC
Martel.test.testformats.swissprot38.OC_block
Martel.test.testformats.swissprot38.OG
Martel.test.testformats.swissprot38.OG_block
Martel.test.testformats.swissprot38.OS
Martel.test.testformats.swissprot38.OS_block
Martel.test.testformats.swissprot38.RA
Martel.test.testformats.swissprot38.RA_block
Martel.test.testformats.swissprot38.RC
Martel.test.testformats.swissprot38.RC_block
Martel.test.testformats.swissprot38.RL
Martel.test.testformats.swissprot38.RL_block
Martel.test.testformats.swissprot38.RN
Martel.test.testformats.swissprot38.RP
Martel.test.testformats.swissprot38.RT
Martel.test.testformats.swissprot38.RT_block
Martel.test.testformats.swissprot38.RX
Martel.test.testformats.swissprot38.SQ
Martel.test.testformats.swissprot38.SQ_data
Martel.test.testformats.swissprot38.bogus_DR_group
Martel.test.testformats.swissprot38.comment
Martel.test.testformats.swissprot38.end
Martel.test.testformats.swissprot38.feature_block
Martel.test.testformats.swissprot38.format
Martel.test.testformats.swissprot38.format_expression
Martel.test.testformats.swissprot38.record
Martel.test.testformats.swissprot38.reference
Martel.test.testformats.swissprot38.sequence
Martel.test.testformats.swissprot38.single_comment
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