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Identifier Index
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_
]
F
fabs
(in
Bio.Affy.CelFile
)
feed()
(in
_PrimerSearchScanner
)
flush()
(in
BerkeleyDB
)
fabs
(in
Bio.distance
)
feed()
(in
_Scanner
)
flush()
(in
MemoryFlatDB
)
FAILURE
(in
Martel.msre_constants
)
feed()
(in
InsdcScanner
)
fmod
(in
Bio.Affy.CelFile
)
False
(in
Bio.EUtils.POM
)
feed()
(in
_Scanner
)
fmod
(in
Bio.distance
)
False_
(in
Bio.Affy.CelFile
)
feed()
(in
InterProParser
)
ForgivingDictionary
False_
(in
Bio.distance
)
feed()
(in
_MASTScanner
)
format
(in
Martel.test.testformats.swissprot38
)
fast_dbxref()
(in
Bio.Std
)
feed()
(in
_MEMEScanner
)
format()
(in
Alignment
)
Fasta
(in
Bio
)
feed()
(in
_Scanner
)
format()
(in
RestrictionBatch
)
fasta
(in
Bio.writers.SeqRecord
)
feed()
(in
_Scanner
)
format()
(in
SeqRecord
)
fasta_mult_align()
(in
FSSPAlignDict
)
feed()
(in
_Scanner
)
format_alignment()
(in
Bio.pairwise2
)
fasta_uniqids()
(in
Bio.SeqUtils
)
feed()
(in
NdbParser
)
format_expression
(in
Martel.test.testformats.swissprot38
)
FastaAlign
(in
Bio.Fasta
)
feed()
(in
ExtractUrls
)
FormatConvert
(in
Bio.Align
)
FastaAlignment
(in
Bio.Fasta.FastaAlign
)
feed()
(in
_Scanner
)
FormatConverter
(in
Bio.Align.FormatConvert
)
FastacmdCommandline
(in
Bio.Blast.Applications
)
feed()
(in
_Scanner
)
formats
(in
Martel
)
FastaIO
(in
Bio.AlignIO
)
feed()
(in
_Scanner
)
FormattedSeq
(in
Bio.Restriction.Restriction
)
FastaIO
(in
Bio.SeqIO
)
feed()
(in
_Scanner
)
forward_algorithm()
(in
AbstractDPAlgorithms
)
FastaIterator()
(in
Bio.SeqIO.FastaIO
)
feed()
(in
_Scanner
)
forward_gc()
(in
_Primer3RecordConsumer
)
FastaM10Iterator
(in
Bio.AlignIO.FastaIO
)
feed()
(in
_Scanner
)
forward_length()
(in
_Primer3RecordConsumer
)
FastaWriter
(in
Bio.SeqIO.FastaIO
)
feed()
(in
_Scanner
)
forward_line
(in
Bio.Emboss.primer3_format
)
FastFeature
feed()
(in
_Scanner
)
forward_primer_gc
(in
Bio.Emboss.primer3_format
)
fatalError()
(in
RecognizeHandler
)
feed()
(in
_Scanner
)
forward_primer_length
(in
Bio.Emboss.primer3_format
)
fatalError()
(in
StoreEvents
)
feed()
(in
_Scanner
)
forward_primer_seq
(in
Bio.Emboss.primer3_format
)
fatalError()
(in
Dump
)
feng
(in
Bio.SubsMat.MatrixInfo
)
forward_primer_start
(in
Bio.Emboss.primer3_format
)
fatalError()
(in
CountErrors
)
fetch()
(in
PublicationFetchMixin
)
forward_primer_tm
(in
Bio.Emboss.primer3_format
)
fcmp()
(in
Bio.mathfns
)
fetch_dbid_by_dbname()
(in
Adaptor
)
forward_seq()
(in
_Primer3RecordConsumer
)
FDist
(in
Bio.PopGen
)
fetch_seqid_by_accession()
(in
Adaptor
)
forward_start()
(in
_Primer3RecordConsumer
)
FDistAsync
(in
Bio.PopGen.FDist.Async
)
fetch_seqid_by_display_id()
(in
Adaptor
)
forward_strand_info
(in
Bio.Emboss.primersearch_format
)
FDistController
(in
Bio.PopGen.FDist.Controller
)
fetch_seqid_by_identifier()
(in
Adaptor
)
forward_table
(in
CodonTable
)
Feature
(in
Bio.GFF
)
fetch_seqid_by_version()
(in
Adaptor
)
forward_tm()
(in
_Primer3RecordConsumer
)
Feature
(in
Bio.GenBank.Record
)
fetch_seqids_by_accession()
(in
Adaptor
)
foundMatch()
(in
GenericASTMatcher
)
Feature
(in
Bio.StdHandler
)
fff_rec
(in
Bio.FSSP.fssp_rec
)
FPE_DIVIDEBYZERO
(in
Bio.Affy.CelFile
)
feature()
(in
Bio.Std
)
Field
(in
Bio.EUtils.DTDs.eInfo_020511
)
FPE_DIVIDEBYZERO
(in
Bio.distance
)
feature_block
(in
Martel.test.testformats.swissprot38
)
Field
(in
Bio.EUtils.DTDs.eSearch_020511
)
FPE_INVALID
(in
Bio.Affy.CelFile
)
feature_block()
(in
Bio.Std
)
FieldNotFound
(in
Bio.EUtils.DTDs.eSearch_020511
)
FPE_INVALID
(in
Bio.distance
)
feature_description()
(in
Bio.Std
)
FieldNotFound
(in
Bio.EUtils.Datatypes
)
FPE_OVERFLOW
(in
Bio.Affy.CelFile
)
FEATURE_END_MARKERS
(in
EmblScanner
)
File
(in
Bio
)
FPE_OVERFLOW
(in
Bio.distance
)
FEATURE_END_MARKERS
(in
GenBankScanner
)
FiledList
(in
Bio.EUtils.DTDs.eInfo_020511
)
FPE_UNDERFLOW
(in
Bio.Affy.CelFile
)
FEATURE_END_MARKERS
(in
InsdcScanner
)
FileIndex
(in
Bio.SCOP
)
FPE_UNDERFLOW
(in
Bio.distance
)
feature_key()
(in
_FeatureConsumer
)
FileIndex
(in
Bio.SCOP.FileIndex
)
Fragment
(in
Bio.PDB.FragmentMapper'
)
feature_key()
(in
_RecordConsumer
)
FileRetriever
(in
Bio.PopGen.Async
)
FragmentMapper
(in
Bio.PDB.FragmentMapper'
)
FEATURE_KEY_INDENT
(in
Bio.GenBank
)
fill_chromosome()
(in
ChromosomeCounts
)
FragmentMapper'
(in
Bio.PDB
)
FEATURE_KEY_SPACER
(in
Bio.GenBank
)
fill_header()
(in
FSSPHeader
)
Fragments
feature_location()
(in
Bio.Std
)
fill_hot_cache()
(in
HotCache
)
frame()
(in
_HSPConsumer
)
feature_location_end()
(in
Bio.Std
)
filter()
(in
Bio.FSSP.FSSPTools
)
frameshift()
(in
_ParametersConsumer
)
feature_location_start()
(in
Bio.Std
)
filter()
(in
FilteredReader
)
FREQ
(in
Bio.SubsMat.FreqTable
)
feature_name()
(in
Bio.Std
)
FilteredReader
(in
Bio
)
FreqTable
(in
Bio.SubsMat
)
feature_qualifier()
(in
Bio.Std
)
FilteredReader
(in
Bio.FilteredReader
)
FreqTable
(in
Bio.SubsMat.FreqTable
)
feature_qualifier_description()
(in
_FeatureConsumer
)
finalize_options()
(in
run_local_tests
)
frequency()
(in
AbstractCut
)
feature_qualifier_description()
(in
_RecordConsumer
)
find()
(in
ElementNode
)
frexp
(in
Bio.Affy.CelFile
)
feature_qualifier_description()
(in
Bio.Std
)
find()
(in
MotifFinder
)
frexp
(in
Bio.distance
)
FEATURE_QUALIFIER_INDENT
(in
Bio.GenBank
)
find()
(in
SchemaFinder
)
From
(in
Bio.EUtils.DTDs.eSearch_020511
)
FEATURE_QUALIFIER_INDENT
(in
EmblScanner
)
find()
(in
SignatureFinder
)
from_dbids()
(in
DBIdsClient
)
FEATURE_QUALIFIER_INDENT
(in
GenBankScanner
)
find()
(in
Seq
)
from_dbids()
(in
Bio.EUtils.DBIdsClient
)
FEATURE_QUALIFIER_INDENT
(in
InsdcScanner
)
find()
(in
Bio.triefind
)
from_motifs()
(in
SchemaFactory
)
feature_qualifier_name()
(in
_FeatureConsumer
)
find_ambiguous()
(in
Schema
)
from_parser()
(in
Bio.DBXRef
)
feature_qualifier_name()
(in
_RecordConsumer
)
find_anychar()
(in
Bio.stringfns
)
from_signatures()
(in
SchemaFactory
)
feature_qualifier_name()
(in
Bio.Std
)
find_differences()
(in
MotifFinder
)
FSSP
(in
Bio
)
FEATURE_QUALIFIER_SPACER
(in
Bio.GenBank
)
find_differences()
(in
SchemaFinder
)
fssp_rec
(in
Bio.FSSP
)
FEATURE_QUALIFIER_SPACER
(in
EmblScanner
)
find_elements()
(in
ElementNode
)
FSSPAlign
(in
Bio.FSSP.FSSPTools
)
FEATURE_QUALIFIER_SPACER
(in
GenBankScanner
)
find_matches()
(in
Schema
)
FSSPAlignDict
(in
Bio.FSSP
)
FEATURE_QUALIFIER_SPACER
(in
InsdcScanner
)
find_related()
(in
Bio.PubMed
)
FSSPAlignRec
(in
Bio.FSSP
)
FEATURE_START_MARKERS
(in
EmblScanner
)
find_schemas()
(in
GeneticAlgorithmFinder
)
FSSPHeader
(in
Bio.FSSP
)
FEATURE_START_MARKERS
(in
GenBankScanner
)
find_start()
(in
InsdcScanner
)
FSSPMultAlign
(in
Bio.FSSP.FSSPTools
)
FEATURE_START_MARKERS
(in
InsdcScanner
)
find_states()
(in
Bio.MarkovModel
)
FSSPSumDict
(in
Bio.FSSP
)
feature_table()
(in
_RecordConsumer
)
find_terms()
(in
Bio.Prosite.Pattern
)
FSSPSumRec
(in
Bio.FSSP
)
FeatureAggregate
(in
Bio.GFF
)
find_words()
(in
Bio.triefind
)
FSSPTools
(in
Bio.FSSP
)
FeatureDict
finditer()
(in
FormattedSeq
)
FT
(in
Martel.test.testformats.swissprot38
)
FeatureLocation
(in
Bio.SeqFeature
)
findseqname()
(in
Location
)
FT_continuation
(in
Martel.test.testformats.swissprot38
)
FeatureName
(in
Bio.GenBank.LocationParser
)
findseqname_3prime()
(in
Location
)
FT_range
(in
Martel.test.testformats.swissprot38
)
FeatureParser
findside()
(in
Location
)
ftp_emb_e
(in
Bio.Restriction.RanaConfig
)
FeatureQuery
(in
Bio.GFF
)
fitch
(in
Bio.SubsMat.MatrixInfo
)
ftp_emb_r
(in
Bio.Restriction.RanaConfig
)
FeatureQueryRow
(in
Bio.GFF
)
five_prime()
(in
Location
)
ftp_emb_s
(in
Bio.Restriction.RanaConfig
)
features
(in
DBSeqRecord
)
fix()
(in
Crystal
)
ftp_proxy
(in
Bio.Restriction.RanaConfig
)
features()
(in
Segment
)
fix_punctuation()
(in
Bio.FilteredReader
)
ftp_Rebase
(in
Bio.Restriction.RanaConfig
)
features()
(in
Expression
)
FixDocumentBuilder
(in
Bio.Mindy.SimpleSeqRecord
)
FtpNameError
(in
Bio.Restriction._Update.Update
)
features()
(in
ExpressionList
)
FIXED
(in
Bio.EUtils.POM
)
FtpPasswordError
(in
Bio.Restriction._Update.Update
)
features()
(in
FastFeature
)
fixspaces()
(in
Bio.Decode
)
full()
(in
Analysis
)
features()
(in
Group
)
flag_disorder()
(in
Atom
)
full_repr()
(in
ElementNode
)
features()
(in
HeaderFooter
)
flag_disordered()
(in
Residue
)
full_repr()
(in
IndentedText
)
features()
(in
MaxRepeat
)
FLAGS
(in
Martel.msre_parse
)
fullpath()
(in
ElementNode
)
features()
(in
ParseRecords
)
FlatDB
(in
Bio.Mindy
)
fullpath()
(in
IndentedText
)
features()
(in
PassThrough
)
flatten()
(in
Multicall
)
Function
(in
Bio.Decode
)
features_line()
(in
_FeatureConsumer
)
Flex
(in
Bio.SeqUtils.ProtParamData
)
Function
(in
Bio.GenBank.LocationParser
)
features_line()
(in
_RecordConsumer
)
flexibility()
(in
ProteinAnalysis
)
function_population()
(in
Bio.GA.Organism
)
FeatureValueCleaner
(in
Bio.GenBank.utils
)
Float
(in
Bio.Decode
)
FunctionCall
(in
Bio.Decode
)
feed()
(in
CelScanner
)
Float()
(in
Martel
)
FunctionCallChain
(in
Bio.Decode
)
feed()
(in
AlignAceScanner
)
FLOATING_POINT_SUPPORT
(in
Bio.Affy.CelFile
)
FunctionHolder
(in
Bio.EUtils.sourcegen
)
feed()
(in
CompareAceScanner
)
FLOATING_POINT_SUPPORT
(in
Bio.distance
)
FunctionIndexer
(in
Bio.Mindy.SimpleSeqRecord
)
feed()
(in
_Scanner
)
floor
(in
Bio.Affy.CelFile
)
FunctionName
(in
Bio.Decode
)
feed()
(in
_Scanner
)
floor
(in
Bio.distance
)
FuzznucCommandline
(in
Bio.Emboss.Applications
)
feed()
(in
_Scanner
)
floor_divide
(in
Bio.Affy.CelFile
)
feed()
(in
_Primer3Scanner
)
floor_divide
(in
Bio.distance
)
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