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Parser for SAF (Simple Alignment Format).
This is a fairly liberal multiple sequence alignment format, where record names may contain up to 14 characters and no blanks. Lines beginging with a hash (#) are ignored.
SAF has been described as a simplified subset of MSF, dropping the checksum and with more flexibility in terms of line length.
A current URL describing this file format is: http://www.predictprotein.org/Dexa/optin_saf.html
This appears to replace the old URL of: http://www.embl-heidelberg.de/predictprotein/Dexa/optin_safDes.html
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Iterator Iterator interface to move over a file of Saf entries one at a time. |
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_Scanner Start up Martel to do the scanning of the file. |
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_RecordConsumer Create a Saf Record object from scanner generated information. |
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RecordParser Parse Saf files into Record objects. |
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